Hb_000123_220

Information

Type transcription factor
Description TF Family: C2H2
Location Contig123: 195004-195573
Sequence    

Annotation

kegg
ID rcu:RCOM_0466460
description nucleic acid binding protein, putative
nr
ID KDP29859.1
description hypothetical protein JCGZ_18434 [Jatropha curcas]
swissprot
ID Q9SLD4
description Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1
trembl
ID A0A067KDD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18434 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_220 0.0 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
2 Hb_006120_150 0.1571309168 - - invertase [Hevea brasiliensis]
3 Hb_012340_060 0.1624747059 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004680_010 0.167071384 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
5 Hb_002042_170 0.1686637934 - - RING/U-box superfamily protein [Theobroma cacao]
6 Hb_025708_010 0.1697451108 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
7 Hb_002027_030 0.1705711485 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004994_180 0.1706849338 - - malic enzyme, putative [Ricinus communis]
9 Hb_168319_010 0.1717121544 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
10 Hb_001381_060 0.1725564329 - - monoxygenase, putative [Ricinus communis]
11 Hb_001147_050 0.1798119791 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
12 Hb_010891_020 0.184217875 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_000735_080 0.1847837247 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
14 Hb_027654_080 0.185663152 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
15 Hb_000123_240 0.1864100371 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_001729_020 0.187598546 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
17 Hb_011618_100 0.1879278925 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
18 Hb_061256_010 0.1884933554 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
19 Hb_001277_050 0.1896418384 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
20 Hb_000656_390 0.1900549093 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000123_220 Hb_000123_220 Hb_006120_150 Hb_006120_150 Hb_000123_220--Hb_006120_150 Hb_012340_060 Hb_012340_060 Hb_000123_220--Hb_012340_060 Hb_004680_010 Hb_004680_010 Hb_000123_220--Hb_004680_010 Hb_002042_170 Hb_002042_170 Hb_000123_220--Hb_002042_170 Hb_025708_010 Hb_025708_010 Hb_000123_220--Hb_025708_010 Hb_002027_030 Hb_002027_030 Hb_000123_220--Hb_002027_030 Hb_012545_030 Hb_012545_030 Hb_006120_150--Hb_012545_030 Hb_000123_240 Hb_000123_240 Hb_006120_150--Hb_000123_240 Hb_010891_020 Hb_010891_020 Hb_006120_150--Hb_010891_020 Hb_005701_110 Hb_005701_110 Hb_006120_150--Hb_005701_110 Hb_006120_150--Hb_002042_170 Hb_004208_140 Hb_004208_140 Hb_006120_150--Hb_004208_140 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_168319_010 Hb_168319_010 Hb_012340_060--Hb_168319_010 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_016734_010 Hb_016734_010 Hb_004680_010--Hb_016734_010 Hb_000735_080 Hb_000735_080 Hb_004680_010--Hb_000735_080 Hb_000111_370 Hb_000111_370 Hb_004680_010--Hb_000111_370 Hb_013726_050 Hb_013726_050 Hb_004680_010--Hb_013726_050 Hb_002304_050 Hb_002304_050 Hb_004680_010--Hb_002304_050 Hb_002445_030 Hb_002445_030 Hb_004680_010--Hb_002445_030 Hb_004774_020 Hb_004774_020 Hb_002042_170--Hb_004774_020 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_003925_040 Hb_003925_040 Hb_002042_170--Hb_003925_040 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020 Hb_025708_020 Hb_025708_020 Hb_025708_010--Hb_025708_020 Hb_025708_010--Hb_168319_010 Hb_025708_010--Hb_012340_060 Hb_025708_010--Hb_000123_240 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_002027_030--Hb_168319_010 Hb_002027_030--Hb_012340_060 Hb_002027_030--Hb_025708_010 Hb_005539_260 Hb_005539_260 Hb_002027_030--Hb_005539_260 Hb_001817_100 Hb_001817_100 Hb_002027_030--Hb_001817_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42197 1.6858 2.02627 1.77078 0.23604 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.327266 0.942974 1.48746 1.05809 0.822377

CAGE analysis