Hb_000123_230

Information

Type -
Description -
Location Contig123: 211341-212229
Sequence    

Annotation

kegg
ID rcu:RCOM_0190620
description hypothetical protein
nr
ID XP_002531984.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T144
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0190620 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hexose transporter hxt14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06977: 211035-212238
cDNA
(Sanger)
(ID:Location)		 037_N21.ab1: 211706-212238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_182305_020 0.0952054738 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
3 Hb_000510_110 0.0991889817 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
4 Hb_000630_060 0.0992129094 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
5 Hb_008175_040 0.0996108794 - - PREDICTED: sm-like protein LSM36B [Jatropha curcas]
6 Hb_006816_220 0.1007657936 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
7 Hb_000454_050 0.1037126424 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
8 Hb_002518_050 0.1067757927 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
9 Hb_000025_600 0.108927698 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
10 Hb_003018_120 0.1098019024 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
11 Hb_002900_160 0.1115447997 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
12 Hb_000251_070 0.1120715158 - - hypothetical protein L484_010641 [Morus notabilis]
13 Hb_181288_010 0.1122265356 - - rac-GTP binding protein, putative [Ricinus communis]
14 Hb_011381_060 0.1132177609 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
15 Hb_007317_150 0.1153031103 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
16 Hb_003683_110 0.1153055095 - - JHL10I11.3 [Jatropha curcas]
17 Hb_002232_130 0.1158523717 - - -
18 Hb_012573_070 0.1159606348 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002045_040 0.1161396306 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_004204_120 0.1168025358 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_230 Hb_000123_230 Hb_182305_020 Hb_182305_020 Hb_000123_230--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_000123_230--Hb_000510_110 Hb_000630_060 Hb_000630_060 Hb_000123_230--Hb_000630_060 Hb_008175_040 Hb_008175_040 Hb_000123_230--Hb_008175_040 Hb_006816_220 Hb_006816_220 Hb_000123_230--Hb_006816_220 Hb_000454_050 Hb_000454_050 Hb_000123_230--Hb_000454_050 Hb_003528_060 Hb_003528_060 Hb_182305_020--Hb_003528_060 Hb_012573_070 Hb_012573_070 Hb_182305_020--Hb_012573_070 Hb_000000_170 Hb_000000_170 Hb_182305_020--Hb_000000_170 Hb_000545_150 Hb_000545_150 Hb_182305_020--Hb_000545_150 Hb_182305_020--Hb_000510_110 Hb_012022_120 Hb_012022_120 Hb_182305_020--Hb_012022_120 Hb_002518_050 Hb_002518_050 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_000510_110--Hb_012573_070 Hb_003683_110 Hb_003683_110 Hb_000510_110--Hb_003683_110 Hb_033594_110 Hb_033594_110 Hb_000630_060--Hb_033594_110 Hb_003927_140 Hb_003927_140 Hb_000630_060--Hb_003927_140 Hb_007317_150 Hb_007317_150 Hb_000630_060--Hb_007317_150 Hb_000926_300 Hb_000926_300 Hb_000630_060--Hb_000926_300 Hb_000630_060--Hb_002518_050 Hb_002110_120 Hb_002110_120 Hb_000630_060--Hb_002110_120 Hb_008175_040--Hb_000454_050 Hb_000127_010 Hb_000127_010 Hb_008175_040--Hb_000127_010 Hb_001328_040 Hb_001328_040 Hb_008175_040--Hb_001328_040 Hb_008175_040--Hb_182305_020 Hb_008175_040--Hb_000510_110 Hb_003398_130 Hb_003398_130 Hb_006816_220--Hb_003398_130 Hb_001234_080 Hb_001234_080 Hb_006816_220--Hb_001234_080 Hb_006816_220--Hb_000454_050 Hb_000109_090 Hb_000109_090 Hb_006816_220--Hb_000109_090 Hb_000251_070 Hb_000251_070 Hb_006816_220--Hb_000251_070 Hb_001184_090 Hb_001184_090 Hb_000454_050--Hb_001184_090 Hb_024682_010 Hb_024682_010 Hb_000454_050--Hb_024682_010 Hb_000494_020 Hb_000494_020 Hb_000454_050--Hb_000494_020 Hb_004204_120 Hb_004204_120 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7333 3.37682 8.40467 7.12686 15.8813 8.58542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6646 35.6338 7.3722 7.42744 5.87344

CAGE analysis