Hb_000123_250

Information

Type -
Description -
Location Contig123: 222642-223776
Sequence    

Annotation

kegg
ID rcu:RCOM_0190600
description hypothetical protein
nr
ID XP_012081577.1
description PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID A0A067K4A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18443 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_250 0.0 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
2 Hb_006810_070 0.2418612453 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_010565_020 0.2858872492 - - -
4 Hb_001414_130 0.2915555694 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_003311_050 0.297199227 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
6 Hb_003238_030 0.3053962161 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
7 Hb_000197_050 0.3098186968 - - AGPase large subunit protein [Hevea brasiliensis]
8 Hb_004453_010 0.3230845261 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001675_120 0.3230990319 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_164458_010 0.3266697218 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_001486_140 0.3283731235 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
12 Hb_134894_010 0.3331244151 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
13 Hb_011377_010 0.3344940688 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
14 Hb_002232_150 0.3346925779 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
15 Hb_001952_130 0.3354186494 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
16 Hb_003640_030 0.3364931573 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
17 Hb_000976_330 0.3365010365 - - hypothetical protein POPTR_0001s05180g [Populus trichocarpa]
18 Hb_002273_060 0.3375372166 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000021_100 0.3385175905 - - -
20 Hb_004525_070 0.3390081389 - - abhydrolase domain containing, putative [Ricinus communis]

Gene co-expression network

sample Hb_000123_250 Hb_000123_250 Hb_006810_070 Hb_006810_070 Hb_000123_250--Hb_006810_070 Hb_010565_020 Hb_010565_020 Hb_000123_250--Hb_010565_020 Hb_001414_130 Hb_001414_130 Hb_000123_250--Hb_001414_130 Hb_003311_050 Hb_003311_050 Hb_000123_250--Hb_003311_050 Hb_003238_030 Hb_003238_030 Hb_000123_250--Hb_003238_030 Hb_000197_050 Hb_000197_050 Hb_000123_250--Hb_000197_050 Hb_007101_220 Hb_007101_220 Hb_006810_070--Hb_007101_220 Hb_006810_070--Hb_003238_030 Hb_006810_070--Hb_010565_020 Hb_030827_050 Hb_030827_050 Hb_006810_070--Hb_030827_050 Hb_006083_060 Hb_006083_060 Hb_006810_070--Hb_006083_060 Hb_010447_020 Hb_010447_020 Hb_010565_020--Hb_010447_020 Hb_164458_010 Hb_164458_010 Hb_010565_020--Hb_164458_010 Hb_033926_010 Hb_033926_010 Hb_010565_020--Hb_033926_010 Hb_010565_020--Hb_003238_030 Hb_094101_010 Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_000832_330 Hb_000832_330 Hb_001414_130--Hb_000832_330 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_018118_040 Hb_018118_040 Hb_001414_130--Hb_018118_040 Hb_000928_150 Hb_000928_150 Hb_003311_050--Hb_000928_150 Hb_009780_090 Hb_009780_090 Hb_003311_050--Hb_009780_090 Hb_003311_050--Hb_094101_010 Hb_010874_030 Hb_010874_030 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_000380_200 Hb_000380_200 Hb_003238_030--Hb_000380_200 Hb_000295_010 Hb_000295_010 Hb_003238_030--Hb_000295_010 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_004525_070 Hb_004525_070 Hb_000197_050--Hb_004525_070 Hb_001662_040 Hb_001662_040 Hb_000197_050--Hb_001662_040 Hb_007982_050 Hb_007982_050 Hb_000197_050--Hb_007982_050 Hb_000134_250 Hb_000134_250 Hb_000197_050--Hb_000134_250 Hb_003780_090 Hb_003780_090 Hb_000197_050--Hb_003780_090 Hb_001373_160 Hb_001373_160 Hb_000197_050--Hb_001373_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126506 0.151458 0.205468 0 0.179631 0.256518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0959536 0 0.426154 0

CAGE analysis