Hb_000123_260

Information

Type -
Description -
Location Contig123: 225982-236500
Sequence    

Annotation

kegg
ID rcu:RCOM_0190490
description Protein gar2, putative
nr
ID XP_012081558.1
description PREDICTED: protein gar2 [Jatropha curcas]
swissprot
ID Q9FGS0
description RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1
trembl
ID A0A067KDE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18444 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein gar2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06982: 226458-235985
cDNA
(Sanger)
(ID:Location)		 036_O08.ab1: 236184-236463

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_260 0.0 - - PREDICTED: protein gar2 [Jatropha curcas]
2 Hb_004600_040 0.0642285694 - - -
3 Hb_007426_230 0.0762414405 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
4 Hb_000189_620 0.0789579673 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
5 Hb_001545_120 0.0810254071 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
6 Hb_003097_150 0.0826490095 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
7 Hb_004195_160 0.083909878 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
8 Hb_006332_020 0.0853595088 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_000243_030 0.0863335599 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
10 Hb_001157_060 0.0885865293 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
11 Hb_001226_160 0.0897756915 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
12 Hb_000532_070 0.0900838133 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
13 Hb_015001_020 0.090696895 - - PREDICTED: la-related protein 6B [Jatropha curcas]
14 Hb_002097_110 0.0910710652 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_002183_090 0.0914700155 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
16 Hb_002636_160 0.0917359882 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
17 Hb_018838_030 0.0924118786 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000421_260 0.0929822489 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
19 Hb_063090_010 0.093125695 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
20 Hb_001477_110 0.0931490511 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000123_260 Hb_000123_260 Hb_004600_040 Hb_004600_040 Hb_000123_260--Hb_004600_040 Hb_007426_230 Hb_007426_230 Hb_000123_260--Hb_007426_230 Hb_000189_620 Hb_000189_620 Hb_000123_260--Hb_000189_620 Hb_001545_120 Hb_001545_120 Hb_000123_260--Hb_001545_120 Hb_003097_150 Hb_003097_150 Hb_000123_260--Hb_003097_150 Hb_004195_160 Hb_004195_160 Hb_000123_260--Hb_004195_160 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_004600_040--Hb_003097_150 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_000189_620--Hb_007426_230 Hb_002006_020 Hb_002006_020 Hb_000189_620--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_000189_620--Hb_001477_110 Hb_000160_170 Hb_000160_170 Hb_000189_620--Hb_000160_170 Hb_002311_350 Hb_002311_350 Hb_000189_620--Hb_002311_350 Hb_002044_080 Hb_002044_080 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_001545_120--Hb_004600_040 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040 Hb_004195_160--Hb_000398_180 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_004195_160--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4028 6.01409 3.32981 4.00883 16.4893 19.2749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7097 22.5939 14.7865 9.37014 6.51957

CAGE analysis