Hb_000123_270

Information

Type -
Description -
Location Contig123: 238764-239279
Sequence    

Annotation

kegg
ID rcu:RCOM_0190480
description hypothetical protein
nr
ID XP_002531980.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T162
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0190480 PE=4 SV=1
Gene Ontology
ID GO:0009507
description cofactor assembly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06984: 236577-239451 , PASA_asmbl_06985: 238437-238830 , PASA_asmbl_06986: 236581-239536
cDNA
(Sanger)
(ID:Location)		 008_K10.ab1: 236577-239190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003020_210 0.1354365529 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
3 Hb_005000_330 0.1633918955 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000948_200 0.164741455 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
5 Hb_003758_020 0.164916307 - - UGTPg34 [Panax ginseng]
6 Hb_004093_020 0.1654030806 - - Calcium-binding EF-hand family protein [Theobroma cacao]
7 Hb_083380_020 0.168553209 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
8 Hb_002960_130 0.1785605931 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
9 Hb_003669_010 0.183247828 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
10 Hb_000473_020 0.1850198088 - - expressed protein, putative [Ricinus communis]
11 Hb_001208_040 0.1870169828 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
12 Hb_004176_070 0.1873073343 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
13 Hb_000544_030 0.1904213594 - - conserved hypothetical protein [Ricinus communis]
14 Hb_016604_030 0.1909522589 - - histone H4 [Zea mays]
15 Hb_004230_020 0.191286911 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
16 Hb_010368_050 0.1955082523 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
17 Hb_007390_020 0.1992293686 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
18 Hb_006452_110 0.200281823 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
19 Hb_002686_110 0.2038514444 - - -
20 Hb_001951_130 0.2049405486 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000123_270 Hb_000123_270 Hb_003020_210 Hb_003020_210 Hb_000123_270--Hb_003020_210 Hb_005000_330 Hb_005000_330 Hb_000123_270--Hb_005000_330 Hb_000948_200 Hb_000948_200 Hb_000123_270--Hb_000948_200 Hb_003758_020 Hb_003758_020 Hb_000123_270--Hb_003758_020 Hb_004093_020 Hb_004093_020 Hb_000123_270--Hb_004093_020 Hb_083380_020 Hb_083380_020 Hb_000123_270--Hb_083380_020 Hb_010368_050 Hb_010368_050 Hb_003020_210--Hb_010368_050 Hb_003020_210--Hb_083380_020 Hb_000539_050 Hb_000539_050 Hb_003020_210--Hb_000539_050 Hb_000215_090 Hb_000215_090 Hb_003020_210--Hb_000215_090 Hb_003020_210--Hb_005000_330 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_000359_150 Hb_000359_150 Hb_005000_330--Hb_000359_150 Hb_002686_110 Hb_002686_110 Hb_005000_330--Hb_002686_110 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_000473_020 Hb_000473_020 Hb_005000_330--Hb_000473_020 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_000544_030 Hb_000544_030 Hb_000948_200--Hb_000544_030 Hb_000217_020 Hb_000217_020 Hb_000948_200--Hb_000217_020 Hb_000005_110 Hb_000005_110 Hb_000948_200--Hb_000005_110 Hb_000948_200--Hb_003020_210 Hb_000948_200--Hb_083380_020 Hb_003669_010 Hb_003669_010 Hb_003758_020--Hb_003669_010 Hb_001427_020 Hb_001427_020 Hb_003758_020--Hb_001427_020 Hb_003758_020--Hb_003020_210 Hb_010883_140 Hb_010883_140 Hb_003758_020--Hb_010883_140 Hb_000086_410 Hb_000086_410 Hb_003758_020--Hb_000086_410 Hb_001951_130 Hb_001951_130 Hb_004093_020--Hb_001951_130 Hb_001377_450 Hb_001377_450 Hb_004093_020--Hb_001377_450 Hb_000365_130 Hb_000365_130 Hb_004093_020--Hb_000365_130 Hb_004093_020--Hb_083380_020 Hb_001056_030 Hb_001056_030 Hb_004093_020--Hb_001056_030 Hb_001863_130 Hb_001863_130 Hb_004093_020--Hb_001863_130 Hb_083380_020--Hb_010368_050 Hb_008147_090 Hb_008147_090 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45239 1.50947 16.0048 28.4716 3.94707 11.3118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5561 19.9356 1.87862 2.20101 6.41112

CAGE analysis