Hb_000123_340

Information

Type -
Description -
Location Contig123: 292497-304668
Sequence    

Annotation

kegg
ID tcc:TCM_005025
description DNA/RNA polymerases superfamily protein
nr
ID XP_012472412.1
description PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID Q9LQH2
description F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_340 0.0 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
2 Hb_001385_070 0.094925595 - - hypothetical protein VITISV_019194 [Vitis vinifera]
3 Hb_000173_110 0.0964639276 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
4 Hb_000820_100 0.1039889114 - - RNA-directed DNA polymerase [Arachis hypogaea]
5 Hb_127552_050 0.1115979516 - - hypothetical protein VITISV_030752 [Vitis vinifera]
6 Hb_007543_020 0.119123967 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
7 Hb_010565_030 0.1253222308 - - hypothetical protein VITISV_006810 [Vitis vinifera]
8 Hb_003687_160 0.1258535564 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_011649_030 0.1275934102 - - hypothetical protein [Vitis hybrid cultivar]
10 Hb_004520_010 0.1292281181 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_001366_260 0.1299816221 - - T4.15 [Malus x robusta]
12 Hb_000352_060 0.1350169837 - - RNA-directed DNA polymerase [Arachis hypogaea]
13 Hb_000574_330 0.1382573152 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_035651_010 0.1386006895 - - receptor-kinase, putative [Ricinus communis]
15 Hb_003913_040 0.1477305948 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_001793_040 0.1483225012 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_011472_050 0.153754999 - - -
18 Hb_102602_020 0.1557994984 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
19 Hb_116784_020 0.1565979335 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
20 Hb_041813_040 0.1590995217 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000123_340 Hb_000123_340 Hb_001385_070 Hb_001385_070 Hb_000123_340--Hb_001385_070 Hb_000173_110 Hb_000173_110 Hb_000123_340--Hb_000173_110 Hb_000820_100 Hb_000820_100 Hb_000123_340--Hb_000820_100 Hb_127552_050 Hb_127552_050 Hb_000123_340--Hb_127552_050 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030 Hb_001385_070--Hb_127552_050 Hb_011649_030 Hb_011649_030 Hb_001385_070--Hb_011649_030 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_001366_260 Hb_001366_260 Hb_000173_110--Hb_001366_260 Hb_000173_110--Hb_000820_100 Hb_000173_110--Hb_010565_030 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050 Hb_000820_100--Hb_001366_260 Hb_000820_100--Hb_007543_020 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_116784_020 Hb_127552_050--Hb_011649_030 Hb_127552_050--Hb_000574_330 Hb_041813_040 Hb_041813_040 Hb_127552_050--Hb_041813_040 Hb_127552_050--Hb_004520_010 Hb_007543_020--Hb_001366_260 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_005542_010 Hb_005542_010 Hb_010565_030--Hb_005542_010 Hb_010565_030--Hb_011472_050 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.081277 1.15046 0.818202 0.4358 0.0783297 0.0979424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0837077 0.137746 0.0577145 1.08271 5.95221

CAGE analysis