Hb_000123_350

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig123: 307580-315010
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21720g
description POPTRDRAFT_833831; ABC transporter family protein
nr
ID AIU41632.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9M3B9
description ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=1 SV=1
trembl
ID A0A097P9R0
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB20 PE=2 SV=1
Gene Ontology
ID GO:0016021
description p-glycoprotein 20 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06988: 290873-309194 , PASA_asmbl_06989: 309465-311797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_350 0.0 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
2 Hb_000896_060 0.070080246 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002485_040 0.0739796455 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
4 Hb_014834_060 0.0839516364 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
5 Hb_000526_060 0.0877644653 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
6 Hb_003060_090 0.092831942 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
7 Hb_012082_010 0.0947083206 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
8 Hb_125126_010 0.0990369602 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
9 Hb_000117_070 0.1009805937 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
10 Hb_001865_060 0.1012392807 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
11 Hb_044653_020 0.1018189613 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
12 Hb_011791_020 0.1023906849 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
13 Hb_104265_030 0.1038094349 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
14 Hb_002942_110 0.10892223 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
15 Hb_000599_130 0.1096506417 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
16 Hb_002387_070 0.1098291731 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
17 Hb_012368_100 0.1106798814 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
18 Hb_000094_320 0.1113457144 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
19 Hb_000189_100 0.1144484769 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
20 Hb_001511_110 0.1159687404 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_350 Hb_000123_350 Hb_000896_060 Hb_000896_060 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_014834_060 Hb_014834_060 Hb_000123_350--Hb_014834_060 Hb_000526_060 Hb_000526_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010 Hb_000896_060--Hb_000526_060 Hb_000896_060--Hb_014834_060 Hb_000117_070 Hb_000117_070 Hb_000896_060--Hb_000117_070 Hb_044653_020 Hb_044653_020 Hb_000896_060--Hb_044653_020 Hb_012368_100 Hb_012368_100 Hb_000896_060--Hb_012368_100 Hb_002485_040--Hb_012082_010 Hb_001865_060 Hb_001865_060 Hb_002485_040--Hb_001865_060 Hb_002774_150 Hb_002774_150 Hb_002485_040--Hb_002774_150 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_002485_040--Hb_000896_060 Hb_005188_040 Hb_005188_040 Hb_014834_060--Hb_005188_040 Hb_024185_010 Hb_024185_010 Hb_014834_060--Hb_024185_010 Hb_014834_060--Hb_000526_060 Hb_000703_130 Hb_000703_130 Hb_014834_060--Hb_000703_130 Hb_000836_020 Hb_000836_020 Hb_014834_060--Hb_000836_020 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000526_060--Hb_000703_130 Hb_144744_010 Hb_144744_010 Hb_003060_090--Hb_144744_010 Hb_003060_090--Hb_014834_060 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100 Hb_012082_010--Hb_044653_020 Hb_012082_010--Hb_000896_060 Hb_003018_040 Hb_003018_040 Hb_012082_010--Hb_003018_040 Hb_000218_020 Hb_000218_020 Hb_012082_010--Hb_000218_020 Hb_000130_280 Hb_000130_280 Hb_012082_010--Hb_000130_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6956 44.0316 9.09744 8.40663 12.5832 12.4947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16618 4.16034 5.83132 11.173 9.71434

CAGE analysis