Hb_000123_370

Information

Type -
Description -
Location Contig123: 320350-325526
Sequence    

Annotation

kegg
ID rcu:RCOM_0190110
description Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative
nr
ID XP_012072933.1
description PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
swissprot
ID P82538
description PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1
trembl
ID A0A067KYP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08401 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbp-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06993: 320549-325517 , PASA_asmbl_06994: 321278-321495
cDNA
(Sanger)
(ID:Location)		 006_M16.ab1: 320801-325517 , 049_F10.ab1: 320780-325489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_370 0.0 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
2 Hb_000538_130 0.1291977237 - - phytoene synthase 2 [Manihot esculenta]
3 Hb_001793_020 0.1376025988 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
4 Hb_000146_030 0.1491312801 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
5 Hb_000000_180 0.1571160709 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
6 Hb_001301_330 0.1582865554 - - OTU-like cysteine protease family protein [Populus trichocarpa]
7 Hb_004007_170 0.1703854843 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_006252_030 0.1709460468 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
9 Hb_003470_100 0.1723310239 - - protein binding protein, putative [Ricinus communis]
10 Hb_004117_040 0.1770405042 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
11 Hb_000169_070 0.1781437863 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
12 Hb_000340_410 0.1784677393 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_001519_170 0.1801939042 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
14 Hb_001047_180 0.1802959298 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000322_040 0.1816010273 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
16 Hb_005690_030 0.1819384479 - - hypothetical protein VITISV_020378 [Vitis vinifera]
17 Hb_001386_090 0.1826795443 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
18 Hb_004459_060 0.184059991 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
19 Hb_002045_090 0.1842180118 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
20 Hb_012545_040 0.1849773972 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_370 Hb_000123_370 Hb_000538_130 Hb_000538_130 Hb_000123_370--Hb_000538_130 Hb_001793_020 Hb_001793_020 Hb_000123_370--Hb_001793_020 Hb_000146_030 Hb_000146_030 Hb_000123_370--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_000123_370--Hb_000000_180 Hb_001301_330 Hb_001301_330 Hb_000123_370--Hb_001301_330 Hb_004007_170 Hb_004007_170 Hb_000123_370--Hb_004007_170 Hb_000538_130--Hb_001301_330 Hb_006846_160 Hb_006846_160 Hb_000538_130--Hb_006846_160 Hb_000392_450 Hb_000392_450 Hb_000538_130--Hb_000392_450 Hb_000749_200 Hb_000749_200 Hb_000538_130--Hb_000749_200 Hb_030545_010 Hb_030545_010 Hb_000538_130--Hb_030545_010 Hb_000465_440 Hb_000465_440 Hb_001793_020--Hb_000465_440 Hb_005333_200 Hb_005333_200 Hb_001793_020--Hb_005333_200 Hb_000665_270 Hb_000665_270 Hb_001793_020--Hb_000665_270 Hb_001793_020--Hb_000749_200 Hb_000402_020 Hb_000402_020 Hb_001793_020--Hb_000402_020 Hb_001793_020--Hb_000146_030 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000146_030--Hb_000402_020 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_000000_180--Hb_004459_060 Hb_001301_330--Hb_000392_450 Hb_006816_190 Hb_006816_190 Hb_001301_330--Hb_006816_190 Hb_000211_040 Hb_000211_040 Hb_001301_330--Hb_000211_040 Hb_001301_330--Hb_000749_200 Hb_007263_010 Hb_007263_010 Hb_001301_330--Hb_007263_010 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_004007_170--Hb_001047_180 Hb_004855_070 Hb_004855_070 Hb_004007_170--Hb_004855_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43365 6.66258 93.7249 30.7258 8.42189 7.82165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5446 13.9477 0.0597665 1.0429 47.6722

CAGE analysis