Hb_000123_390

Information

Type -
Description -
Location Contig123: 345162-345863
Sequence    

Annotation

kegg
ID rcu:RCOM_0543290
description hypothetical protein
nr
ID XP_002526573.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKQ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0543290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_390 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001584_230 0.1024379012 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
3 Hb_005799_030 0.1211109471 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
4 Hb_001135_270 0.1320458525 - - -
5 Hb_081636_010 0.1483870175 - - -
6 Hb_001899_010 0.1751365004 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
7 Hb_179763_010 0.1788767794 - - -
8 Hb_114868_010 0.2005285261 - - -
9 Hb_005116_020 0.2032248414 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
10 Hb_029866_010 0.2052939266 - - -
11 Hb_003529_220 0.2150718964 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
12 Hb_001159_210 0.2177409315 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
13 Hb_033225_020 0.2195053359 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003529_210 0.2248424401 - - -
15 Hb_000204_180 0.2263086603 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_000227_110 0.2281343546 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
17 Hb_128287_010 0.2295520014 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_002141_010 0.2298596613 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_013983_010 0.2304890446 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
20 Hb_108404_010 0.2333052979 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000123_390 Hb_000123_390 Hb_001584_230 Hb_001584_230 Hb_000123_390--Hb_001584_230 Hb_005799_030 Hb_005799_030 Hb_000123_390--Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_000123_390--Hb_001135_270 Hb_081636_010 Hb_081636_010 Hb_000123_390--Hb_081636_010 Hb_001899_010 Hb_001899_010 Hb_000123_390--Hb_001899_010 Hb_179763_010 Hb_179763_010 Hb_000123_390--Hb_179763_010 Hb_001584_230--Hb_005799_030 Hb_001584_230--Hb_001135_270 Hb_001584_230--Hb_081636_010 Hb_029866_010 Hb_029866_010 Hb_001584_230--Hb_029866_010 Hb_001584_230--Hb_001899_010 Hb_005799_030--Hb_001135_270 Hb_005799_030--Hb_081636_010 Hb_005799_030--Hb_001899_010 Hb_005799_030--Hb_179763_010 Hb_001135_270--Hb_081636_010 Hb_067345_050 Hb_067345_050 Hb_001135_270--Hb_067345_050 Hb_001135_270--Hb_001899_010 Hb_013983_010 Hb_013983_010 Hb_081636_010--Hb_013983_010 Hb_081636_010--Hb_067345_050 Hb_081636_010--Hb_029866_010 Hb_003529_210 Hb_003529_210 Hb_001899_010--Hb_003529_210 Hb_001899_010--Hb_179763_010 Hb_003529_220 Hb_003529_220 Hb_001899_010--Hb_003529_220 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020 Hb_179763_010--Hb_001135_270 Hb_179763_010--Hb_003529_210 Hb_179763_010--Hb_001584_230 Hb_179763_010--Hb_003529_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.350565 0 0 0 2.5796 1.35641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805846 0 0 0 0

CAGE analysis