Hb_000125_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 34021-34353
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07595: 33629-115049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_010 0.0 transcription factor TF Family: mTERF -
2 Hb_082006_010 0.1097252576 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001747_030 0.1105122256 - - hypothetical protein F383_08210 [Gossypium arboreum]
4 Hb_002735_050 0.1236268636 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
5 Hb_003352_040 0.1239962002 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
6 Hb_002259_160 0.1259079531 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
7 Hb_001268_050 0.1269938753 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
8 Hb_000635_070 0.1270206119 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
9 Hb_000340_520 0.1328490223 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
10 Hb_000342_160 0.1340673124 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
11 Hb_000481_050 0.1341424268 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
12 Hb_000125_080 0.1429092566 transcription factor TF Family: mTERF -
13 Hb_002562_110 0.1443376047 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
14 Hb_000300_630 0.1444969852 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
15 Hb_001135_140 0.1445446782 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
16 Hb_000083_170 0.1447921109 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
17 Hb_003697_050 0.1451362408 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
18 Hb_086085_020 0.1455519095 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
19 Hb_041205_010 0.1456039016 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002078_260 0.1458208067 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000125_010 Hb_000125_010 Hb_082006_010 Hb_082006_010 Hb_000125_010--Hb_082006_010 Hb_001747_030 Hb_001747_030 Hb_000125_010--Hb_001747_030 Hb_002735_050 Hb_002735_050 Hb_000125_010--Hb_002735_050 Hb_003352_040 Hb_003352_040 Hb_000125_010--Hb_003352_040 Hb_002259_160 Hb_002259_160 Hb_000125_010--Hb_002259_160 Hb_001268_050 Hb_001268_050 Hb_000125_010--Hb_001268_050 Hb_000635_070 Hb_000635_070 Hb_082006_010--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_009270_030 Hb_009270_030 Hb_082006_010--Hb_009270_030 Hb_002078_260 Hb_002078_260 Hb_082006_010--Hb_002078_260 Hb_129672_010 Hb_129672_010 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_003697_050 Hb_003697_050 Hb_002735_050--Hb_003697_050 Hb_004935_060 Hb_004935_060 Hb_002735_050--Hb_004935_060 Hb_003141_070 Hb_003141_070 Hb_002735_050--Hb_003141_070 Hb_002289_080 Hb_002289_080 Hb_002735_050--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_002735_050--Hb_002284_230 Hb_025098_010 Hb_025098_010 Hb_002735_050--Hb_025098_010 Hb_000083_170 Hb_000083_170 Hb_003352_040--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_003352_040--Hb_037887_010 Hb_003352_040--Hb_002259_160 Hb_012675_070 Hb_012675_070 Hb_003352_040--Hb_012675_070 Hb_003352_040--Hb_001268_050 Hb_001504_080 Hb_001504_080 Hb_003352_040--Hb_001504_080 Hb_002259_160--Hb_000083_170 Hb_002259_160--Hb_037887_010 Hb_002259_160--Hb_012675_070 Hb_000326_090 Hb_000326_090 Hb_002259_160--Hb_000326_090 Hb_002259_160--Hb_041205_010 Hb_001268_050--Hb_003697_050 Hb_003502_090 Hb_003502_090 Hb_001268_050--Hb_003502_090 Hb_001268_050--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_001268_050--Hb_000479_190 Hb_021443_100 Hb_021443_100 Hb_001268_050--Hb_021443_100 Hb_001268_050--Hb_000326_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61557 4.18258 2.78359 23.1856 2.78534 14.9089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.16975 10.7827 10.9764 6.11102 5.24089

CAGE analysis