Hb_000125_030

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 41550-42349
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019510mg
description hypothetical protein
nr
ID XP_007219362.1
description hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5X4Z6
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019510mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07595: 33629-115049
cDNA
(Sanger)
(ID:Location)		 013_M10r.ab1: 41089-42607

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_030 0.0 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
2 Hb_000406_120 0.0808473011 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
3 Hb_002056_060 0.0829365449 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_003642_050 0.0923300345 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
5 Hb_003504_020 0.0934959683 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
6 Hb_000141_020 0.0946710961 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
7 Hb_010407_180 0.0965542171 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
8 Hb_021409_160 0.0990776672 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
9 Hb_001616_030 0.101748653 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
10 Hb_003581_260 0.1026260134 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
11 Hb_000196_080 0.1053049401 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
12 Hb_029866_020 0.1068447908 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
13 Hb_003579_030 0.1078316238 - - phosphatase 2C family protein [Populus trichocarpa]
14 Hb_000563_250 0.1079407531 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
15 Hb_000366_090 0.108629286 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
16 Hb_001159_080 0.1113588798 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
17 Hb_001956_070 0.1121301837 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
18 Hb_031862_110 0.1122320611 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_004414_050 0.1129187959 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002301_230 0.1136302451 - - hypothetical protein JCGZ_21466 [Jatropha curcas]

Gene co-expression network

sample Hb_000125_030 Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_003504_020 Hb_003504_020 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_000406_120--Hb_000141_020 Hb_002045_180 Hb_002045_180 Hb_000406_120--Hb_002045_180 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_000406_120--Hb_010407_180 Hb_000406_120--Hb_002056_060 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_003581_260 Hb_003581_260 Hb_003642_050--Hb_003581_260 Hb_003642_050--Hb_003504_020 Hb_001159_080 Hb_001159_080 Hb_003642_050--Hb_001159_080 Hb_012799_100 Hb_012799_100 Hb_003642_050--Hb_012799_100 Hb_001096_110 Hb_001096_110 Hb_003642_050--Hb_001096_110 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_003504_020--Hb_000141_020 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_000141_020--Hb_001159_080 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17834 1.21739 0.84489 0.966307 0.654273 1.23419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.17934 4.16294 5.29796 1.21053 0.974526

CAGE analysis