Hb_000125_080

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 113895-114786
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07595: 33629-115049 , PASA_asmbl_07597: 114748-115039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_080 0.0 transcription factor TF Family: mTERF -
2 Hb_092337_010 0.0839860473 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
3 Hb_003108_020 0.0892012614 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
4 Hb_000406_080 0.091242733 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
5 Hb_004473_040 0.0965587508 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004705_100 0.0995001328 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
7 Hb_181385_010 0.102360759 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
8 Hb_004738_100 0.1028167341 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
9 Hb_003502_090 0.1056638222 - - ATP synthase subunit d, putative [Ricinus communis]
10 Hb_001057_040 0.1085138915 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
11 Hb_000002_380 0.1114238068 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
12 Hb_000479_190 0.1116818913 - - conserved hypothetical protein [Ricinus communis]
13 Hb_155159_020 0.1141104356 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
14 Hb_000125_100 0.114590743 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
15 Hb_003092_030 0.1154600088 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
16 Hb_000417_040 0.1154944713 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
17 Hb_021238_050 0.1168506281 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000453_160 0.1174558744 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
19 Hb_000162_260 0.1181606589 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
20 Hb_000363_360 0.1182385394 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]

Gene co-expression network

sample Hb_000125_080 Hb_000125_080 Hb_092337_010 Hb_092337_010 Hb_000125_080--Hb_092337_010 Hb_003108_020 Hb_003108_020 Hb_000125_080--Hb_003108_020 Hb_000406_080 Hb_000406_080 Hb_000125_080--Hb_000406_080 Hb_004473_040 Hb_004473_040 Hb_000125_080--Hb_004473_040 Hb_004705_100 Hb_004705_100 Hb_000125_080--Hb_004705_100 Hb_181385_010 Hb_181385_010 Hb_000125_080--Hb_181385_010 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_000692_220 Hb_000692_220 Hb_092337_010--Hb_000692_220 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_092337_010--Hb_003108_020 Hb_092337_010--Hb_004705_100 Hb_000125_100 Hb_000125_100 Hb_092337_010--Hb_000125_100 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_000406_080--Hb_181385_010 Hb_000025_180 Hb_000025_180 Hb_004473_040--Hb_000025_180 Hb_004473_040--Hb_003108_020 Hb_001922_050 Hb_001922_050 Hb_004473_040--Hb_001922_050 Hb_004473_040--Hb_000406_080 Hb_004473_040--Hb_000417_040 Hb_005686_060 Hb_005686_060 Hb_004705_100--Hb_005686_060 Hb_010172_080 Hb_010172_080 Hb_004705_100--Hb_010172_080 Hb_000700_110 Hb_000700_110 Hb_004705_100--Hb_000700_110 Hb_004705_100--Hb_000692_220 Hb_009773_020 Hb_009773_020 Hb_004705_100--Hb_009773_020 Hb_181385_010--Hb_004473_040 Hb_002983_050 Hb_002983_050 Hb_181385_010--Hb_002983_050 Hb_181385_010--Hb_000417_040 Hb_181385_010--Hb_001057_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01957 1.14548 0.772401 3.89622 1.33437 2.68703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29086 3.25755 2.52867 1.83402 0.657901

CAGE analysis