Hb_000125_120

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 138691-140111
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07601: 138336-201273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_120 0.0 transcription factor TF Family: mTERF -
2 Hb_012670_140 0.1396661483 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
3 Hb_063100_010 0.1432216377 - - TATA box-binding protein-associated factor [Populus trichocarpa]
4 Hb_000244_300 0.1463346331 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
5 Hb_012799_110 0.1513801129 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
6 Hb_001720_010 0.1516122149 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_054865_090 0.1544312675 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
8 Hb_023827_040 0.1550374978 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
9 Hb_004102_100 0.1566871535 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
10 Hb_000196_070 0.1582654141 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH80-like [Jatropha curcas]
11 Hb_001014_050 0.158291587 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
12 Hb_000394_190 0.158958583 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_001898_230 0.1596646361 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
14 Hb_000890_040 0.1622046363 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
15 Hb_001623_140 0.1624183948 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
16 Hb_004117_030 0.1643878417 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
17 Hb_001584_170 0.1654210282 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_003878_140 0.1668140337 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
19 Hb_001141_330 0.1693055444 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
20 Hb_000663_040 0.1693888717 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000125_120 Hb_000125_120 Hb_012670_140 Hb_012670_140 Hb_000125_120--Hb_012670_140 Hb_063100_010 Hb_063100_010 Hb_000125_120--Hb_063100_010 Hb_000244_300 Hb_000244_300 Hb_000125_120--Hb_000244_300 Hb_012799_110 Hb_012799_110 Hb_000125_120--Hb_012799_110 Hb_001720_010 Hb_001720_010 Hb_000125_120--Hb_001720_010 Hb_054865_090 Hb_054865_090 Hb_000125_120--Hb_054865_090 Hb_002205_040 Hb_002205_040 Hb_012670_140--Hb_002205_040 Hb_001014_050 Hb_001014_050 Hb_012670_140--Hb_001014_050 Hb_007108_030 Hb_007108_030 Hb_012670_140--Hb_007108_030 Hb_006816_320 Hb_006816_320 Hb_012670_140--Hb_006816_320 Hb_001141_330 Hb_001141_330 Hb_012670_140--Hb_001141_330 Hb_001789_240 Hb_001789_240 Hb_012670_140--Hb_001789_240 Hb_045046_010 Hb_045046_010 Hb_063100_010--Hb_045046_010 Hb_003878_140 Hb_003878_140 Hb_063100_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_063100_010--Hb_000224_060 Hb_001584_170 Hb_001584_170 Hb_063100_010--Hb_001584_170 Hb_002977_010 Hb_002977_010 Hb_063100_010--Hb_002977_010 Hb_000465_310 Hb_000465_310 Hb_063100_010--Hb_000465_310 Hb_000394_190 Hb_000394_190 Hb_000244_300--Hb_000394_190 Hb_000663_040 Hb_000663_040 Hb_000244_300--Hb_000663_040 Hb_000359_330 Hb_000359_330 Hb_000244_300--Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000244_300--Hb_011848_010 Hb_000140_080 Hb_000140_080 Hb_000244_300--Hb_000140_080 Hb_003849_060 Hb_003849_060 Hb_000244_300--Hb_003849_060 Hb_011942_080 Hb_011942_080 Hb_012799_110--Hb_011942_080 Hb_012799_110--Hb_000394_190 Hb_012799_110--Hb_003849_060 Hb_012799_110--Hb_011848_010 Hb_033095_020 Hb_033095_020 Hb_012799_110--Hb_033095_020 Hb_003467_010 Hb_003467_010 Hb_012799_110--Hb_003467_010 Hb_001288_080 Hb_001288_080 Hb_001720_010--Hb_001288_080 Hb_001610_110 Hb_001610_110 Hb_001720_010--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_001720_010--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001720_010--Hb_004324_340 Hb_001168_040 Hb_001168_040 Hb_001720_010--Hb_001168_040 Hb_001720_010--Hb_000244_300 Hb_000275_170 Hb_000275_170 Hb_054865_090--Hb_000275_170 Hb_054865_090--Hb_001610_110 Hb_005332_070 Hb_005332_070 Hb_054865_090--Hb_005332_070 Hb_054865_090--Hb_000663_040 Hb_054865_090--Hb_000244_300 Hb_005694_110 Hb_005694_110 Hb_054865_090--Hb_005694_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3974 27.6156 14.5935 0 25.5654 38.7666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5411 26.6374 13.8356 6.66748 7.75541

CAGE analysis