Hb_000125_130

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 155979-174812
Sequence    

Annotation

kegg
ID vvi:104879785
description uncharacterized LOC104879785
nr
ID XP_010652159.1
description PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZM9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03860 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07602: 140280-166363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_130 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
2 Hb_007904_200 0.0600912524 - - protein binding protein, putative [Ricinus communis]
3 Hb_008643_040 0.0630281926 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
4 Hb_010712_030 0.0645098675 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000365_390 0.0665279975 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
6 Hb_010457_030 0.0753159246 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
7 Hb_002835_080 0.0769373591 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
8 Hb_000010_330 0.0770739114 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
9 Hb_143629_210 0.0779016289 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
10 Hb_004032_150 0.0806908705 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
11 Hb_004310_020 0.0832702169 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
12 Hb_000512_060 0.0837024351 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
13 Hb_000205_300 0.0845520696 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
14 Hb_007416_280 0.0851852643 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000099_080 0.0855593442 - - kinesin light chain, putative [Ricinus communis]
16 Hb_008643_210 0.0859600507 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
17 Hb_003464_050 0.0869539215 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
18 Hb_004767_100 0.0871245006 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_001248_060 0.0871478424 - - conserved hypothetical protein [Ricinus communis]
20 Hb_148644_010 0.0885704794 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000125_130 Hb_000125_130 Hb_007904_200 Hb_007904_200 Hb_000125_130--Hb_007904_200 Hb_008643_040 Hb_008643_040 Hb_000125_130--Hb_008643_040 Hb_010712_030 Hb_010712_030 Hb_000125_130--Hb_010712_030 Hb_000365_390 Hb_000365_390 Hb_000125_130--Hb_000365_390 Hb_010457_030 Hb_010457_030 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_000010_330 Hb_000010_330 Hb_007904_200--Hb_000010_330 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_000045_090 Hb_000045_090 Hb_008643_040--Hb_000045_090 Hb_008643_040--Hb_000365_390 Hb_004767_100 Hb_004767_100 Hb_008643_040--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_008643_040--Hb_007416_280 Hb_000205_300 Hb_000205_300 Hb_008643_040--Hb_000205_300 Hb_004310_020 Hb_004310_020 Hb_010712_030--Hb_004310_020 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_000365_390--Hb_010457_030 Hb_000365_390--Hb_000010_330 Hb_000365_390--Hb_007904_200 Hb_001638_170 Hb_001638_170 Hb_000365_390--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_000365_390--Hb_148644_010 Hb_010457_030--Hb_000010_330 Hb_048937_040 Hb_048937_040 Hb_010457_030--Hb_048937_040 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_002835_080--Hb_019280_040 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30007 2.10934 1.33948 2.44413 2.13243 3.6507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1029 2.55614 2.61762 1.10563 1.08741

CAGE analysis