Hb_000125_170

Information

Type transcription factor
Description TF Family: mTERF
Location Contig125: 194714-201673
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID CAN68939.1
description hypothetical protein VITISV_028994 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03870 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07607: 200353-201461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_170 0.0 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
2 Hb_000181_070 0.0537694167 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_003052_140 0.0575311935 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
4 Hb_031527_040 0.0648349406 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
5 Hb_000373_150 0.0670537726 - - PREDICTED: protein FAM188A [Jatropha curcas]
6 Hb_007416_180 0.0684558092 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
7 Hb_003464_050 0.07503262 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
8 Hb_001252_010 0.0755821367 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
9 Hb_005675_040 0.0780389075 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
10 Hb_140506_010 0.0782247862 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
11 Hb_093084_060 0.0824574712 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
12 Hb_000099_080 0.082725653 - - kinesin light chain, putative [Ricinus communis]
13 Hb_001818_070 0.0832616695 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_000230_120 0.0841580022 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
15 Hb_001595_030 0.0855515574 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
16 Hb_004785_060 0.0856551102 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
17 Hb_004767_050 0.0860770851 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
18 Hb_010712_030 0.0865263233 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001248_060 0.0880481301 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005541_010 0.0882002618 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]

Gene co-expression network

sample Hb_000125_170 Hb_000125_170 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_003052_140 Hb_003052_140 Hb_000125_170--Hb_003052_140 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_007416_180 Hb_007416_180 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_000181_070--Hb_007416_180 Hb_000512_060 Hb_000512_060 Hb_000181_070--Hb_000512_060 Hb_000230_120 Hb_000230_120 Hb_000181_070--Hb_000230_120 Hb_000181_070--Hb_031527_040 Hb_007532_030 Hb_007532_030 Hb_000181_070--Hb_007532_030 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_093084_060 Hb_093084_060 Hb_000373_150--Hb_093084_060 Hb_000521_260 Hb_000521_260 Hb_000373_150--Hb_000521_260 Hb_001780_020 Hb_001780_020 Hb_000373_150--Hb_001780_020 Hb_000373_150--Hb_003052_140 Hb_000373_150--Hb_003464_050 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_005532_050 Hb_005532_050 Hb_003464_050--Hb_005532_050 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_003464_050--Hb_001595_030 Hb_143629_210 Hb_143629_210 Hb_003464_050--Hb_143629_210 Hb_008803_090 Hb_008803_090 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28967 6.90225 2.6904 3.80743 5.6942 6.61513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17751 6.13172 6.40036 3.07786 1.90928

CAGE analysis