Hb_000125_190

Information

Type -
Description -
Location Contig125: 242809-248977
Sequence    

Annotation

kegg
ID rcu:RCOM_0454500
description protein with unknown function
nr
ID XP_012065207.1
description PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
swissprot
ID Q9LND7
description F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1
trembl
ID A0A067LH31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20895 PE=4 SV=1
Gene Ontology
ID GO:0019005
description f-box protein skip16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07615: 242800-248936 , PASA_asmbl_07616: 245947-246156
cDNA
(Sanger)
(ID:Location)		 031_B04.ab1: 242800-244380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_190 0.0 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
2 Hb_001519_050 0.0674854045 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
3 Hb_020400_050 0.073679659 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
4 Hb_000635_150 0.0744936171 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
5 Hb_002061_040 0.0806860687 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_000123_170 0.0826964969 - - Rab3 [Hevea brasiliensis]
7 Hb_001833_110 0.0842088119 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004705_120 0.0848063461 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000656_110 0.0857459687 - - nucleolysin tia-1, putative [Ricinus communis]
10 Hb_012053_070 0.0928708267 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
11 Hb_001369_690 0.0961436399 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
12 Hb_000025_120 0.0972765731 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
13 Hb_004724_340 0.099234386 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
14 Hb_001439_100 0.0995088058 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
15 Hb_093084_050 0.0996692806 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
16 Hb_002005_020 0.1005425701 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004218_110 0.1011803891 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
18 Hb_010042_010 0.1013135412 - - Urease accessory protein ureD, putative [Ricinus communis]
19 Hb_001360_050 0.1017738138 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_000331_450 0.1022126827 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000125_190 Hb_000125_190 Hb_001519_050 Hb_001519_050 Hb_000125_190--Hb_001519_050 Hb_020400_050 Hb_020400_050 Hb_000125_190--Hb_020400_050 Hb_000635_150 Hb_000635_150 Hb_000125_190--Hb_000635_150 Hb_002061_040 Hb_002061_040 Hb_000125_190--Hb_002061_040 Hb_000123_170 Hb_000123_170 Hb_000125_190--Hb_000123_170 Hb_001833_110 Hb_001833_110 Hb_000125_190--Hb_001833_110 Hb_001519_050--Hb_000635_150 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_001519_050--Hb_002061_040 Hb_020400_050--Hb_000123_170 Hb_002016_100 Hb_002016_100 Hb_020400_050--Hb_002016_100 Hb_000025_120 Hb_000025_120 Hb_020400_050--Hb_000025_120 Hb_020400_050--Hb_002061_040 Hb_012053_070 Hb_012053_070 Hb_020400_050--Hb_012053_070 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_001396_100 Hb_001396_100 Hb_000123_170--Hb_001396_100 Hb_000123_170--Hb_000025_120 Hb_001904_090 Hb_001904_090 Hb_000123_170--Hb_001904_090 Hb_000668_040 Hb_000668_040 Hb_000123_170--Hb_000668_040 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0077 40.4962 22.2348 71.6265 46.0651 71.4715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.035 97.6708 110.244 61.9615 36.8751

CAGE analysis