Hb_000125_200

Information

Type transcription factor
Description TF Family: bZIP
Location Contig125: 261222-265914
Sequence    

Annotation

kegg
ID rcu:RCOM_0454610
description Transcription factor RF2a, putative
nr
ID XP_012065205.1
description PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
swissprot
ID Q04088
description Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1
trembl
ID A0A067LI27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20894 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07618: 261886-265768 , PASA_asmbl_07619: 261886-265135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_200 0.0 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
2 Hb_014361_150 0.0820170154 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
3 Hb_000983_120 0.090116308 - - cyclin-dependent protein kinase, putative [Ricinus communis]
4 Hb_000260_440 0.0910004176 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
5 Hb_000042_340 0.0918714229 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_001377_320 0.0930053301 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
7 Hb_000291_060 0.0972495315 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
8 Hb_004357_020 0.0986168895 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
9 Hb_001635_040 0.1018422032 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
10 Hb_000599_080 0.1020985105 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
11 Hb_002965_040 0.103361156 - - drought-responsive family protein [Populus trichocarpa]
12 Hb_001751_140 0.103933825 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
13 Hb_143766_110 0.1061082494 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
14 Hb_011310_210 0.1062018655 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
15 Hb_000162_030 0.106431689 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
16 Hb_001728_050 0.1074149076 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
17 Hb_001147_110 0.1076728187 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
18 Hb_000086_500 0.1098764646 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_000760_020 0.1103377122 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
20 Hb_027073_030 0.1122575972 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]

Gene co-expression network

sample Hb_000125_200 Hb_000125_200 Hb_014361_150 Hb_014361_150 Hb_000125_200--Hb_014361_150 Hb_000983_120 Hb_000983_120 Hb_000125_200--Hb_000983_120 Hb_000260_440 Hb_000260_440 Hb_000125_200--Hb_000260_440 Hb_000042_340 Hb_000042_340 Hb_000125_200--Hb_000042_340 Hb_001377_320 Hb_001377_320 Hb_000125_200--Hb_001377_320 Hb_000291_060 Hb_000291_060 Hb_000125_200--Hb_000291_060 Hb_014361_150--Hb_000260_440 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160 Hb_039605_010 Hb_039605_010 Hb_000983_120--Hb_039605_010 Hb_000983_120--Hb_000042_340 Hb_003994_140 Hb_003994_140 Hb_000983_120--Hb_003994_140 Hb_002928_010 Hb_002928_010 Hb_000983_120--Hb_002928_010 Hb_000525_100 Hb_000525_100 Hb_000983_120--Hb_000525_100 Hb_027073_030 Hb_027073_030 Hb_000983_120--Hb_027073_030 Hb_143766_110 Hb_143766_110 Hb_000260_440--Hb_143766_110 Hb_000777_050 Hb_000777_050 Hb_000260_440--Hb_000777_050 Hb_000260_440--Hb_000291_060 Hb_007765_080 Hb_007765_080 Hb_000260_440--Hb_007765_080 Hb_001635_040 Hb_001635_040 Hb_000260_440--Hb_001635_040 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_003813_040 Hb_003813_040 Hb_001377_320--Hb_003813_040 Hb_002022_060 Hb_002022_060 Hb_001377_320--Hb_002022_060 Hb_007904_120 Hb_007904_120 Hb_001377_320--Hb_007904_120 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_001377_320--Hb_000189_330 Hb_006816_050 Hb_006816_050 Hb_000291_060--Hb_006816_050 Hb_001143_180 Hb_001143_180 Hb_000291_060--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_000291_060--Hb_154114_010 Hb_002078_110 Hb_002078_110 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.5782 31.7798 33.8916 17.8999 17.5342 33.5699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5519 11.1743 16.0121 10.7329 13.1042

CAGE analysis