Hb_000125_210

Information

Type -
Description -
Location Contig125: 267122-282719
Sequence    

Annotation

kegg
ID rcu:RCOM_0454620
description electron transfer flavoprotein-ubiquinone oxidoreductase, putative (EC:1.5.5.1)
nr
ID XP_012065203.1
description PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
swissprot
ID O22854
description Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Arabidopsis thaliana GN=ETFQO PE=2 SV=1
trembl
ID B9SU11
description Electron transfer flavoprotein-ubiquinone oxidoreductase, putative OS=Ricinus communis GN=RCOM_0454620 PE=4 SV=1
Gene Ontology
ID GO:0005739
description electron transfer flavoprotein-ubiquinone mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07622: 267305-273829 , PASA_asmbl_07623: 267362-272069 , PASA_asmbl_07626: 274574-282512 , PASA_asmbl_07627: 280397-280626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_210 0.0 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
2 Hb_000673_020 0.0774034648 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
3 Hb_161175_010 0.0776554932 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
4 Hb_000096_150 0.078071398 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000318_160 0.0892635122 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
6 Hb_003349_080 0.0914812467 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
7 Hb_000175_030 0.0915945761 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
8 Hb_019113_020 0.0949478865 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
9 Hb_003050_280 0.0956587832 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
10 Hb_002503_020 0.0957538292 - - Phosphatase 2C family protein, putative [Theobroma cacao]
11 Hb_027654_050 0.0974793867 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
12 Hb_000224_140 0.0993748843 - - ribonuclease z, chloroplast, putative [Ricinus communis]
13 Hb_003880_030 0.0999938459 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
14 Hb_001218_040 0.1017689158 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
15 Hb_000928_130 0.1033308729 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000997_360 0.1065629465 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
17 Hb_011512_040 0.1079637771 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
18 Hb_001904_090 0.1109804783 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
19 Hb_003849_150 0.1142997817 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
20 Hb_000934_190 0.1153860612 - - SER/ARG-rich protein 34A [Theobroma cacao]

Gene co-expression network

sample Hb_000125_210 Hb_000125_210 Hb_000673_020 Hb_000673_020 Hb_000125_210--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000125_210--Hb_161175_010 Hb_000096_150 Hb_000096_150 Hb_000125_210--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000175_030 Hb_000175_030 Hb_000125_210--Hb_000175_030 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_161175_010--Hb_000175_030 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_161175_010--Hb_000673_020 Hb_000056_250 Hb_000056_250 Hb_000096_150--Hb_000056_250 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000096_150--Hb_000318_160 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490 Hb_003349_080--Hb_000224_140 Hb_003349_080--Hb_003050_280 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_011021_040 Hb_011021_040 Hb_000175_030--Hb_011021_040 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_007192_100 Hb_007192_100 Hb_000175_030--Hb_007192_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7151 2.06455 4.62665 4.53278 2.10189 3.64071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4151 13.1454 12.6375 5.81052 8.91842

CAGE analysis