Hb_000126_010

Information

Type -
Description -
Location Contig126: 47858-59480
Sequence    

Annotation

kegg
ID rcu:RCOM_1252300
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012091849.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FXF2
description Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1
trembl
ID B9S8F8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1252300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase rfk1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07924: 49687-50365 , PASA_asmbl_07926: 50067-52739 , PASA_asmbl_07927: 52992-53289 , PASA_asmbl_07928: 53291-56144 , PASA_asmbl_07929: 54778-54913 , PASA_asmbl_07930: 57403-58920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000126_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
2 Hb_000005_220 0.0722536536 - - DNA ligase 1, partial [Glycine soja]
3 Hb_002374_010 0.0747459037 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
4 Hb_002445_100 0.0781016163 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
5 Hb_000163_220 0.0781237756 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
6 Hb_063716_100 0.0784008506 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
7 Hb_000302_310 0.0821463786 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
8 Hb_001214_060 0.0822072082 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
9 Hb_001040_100 0.08403832 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
10 Hb_005779_010 0.0850572474 - - catalytic, putative [Ricinus communis]
11 Hb_000020_150 0.0853169935 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
12 Hb_003159_140 0.0856486575 - - conserved hypothetical protein [Ricinus communis]
13 Hb_106552_020 0.0866225258 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
14 Hb_011909_120 0.0870774963 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
15 Hb_001599_040 0.0871954272 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
16 Hb_004319_080 0.0877822205 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
17 Hb_000416_110 0.0889029857 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
18 Hb_033642_090 0.0910973458 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001123_030 0.0938721415 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_002110_230 0.0943213218 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000126_010 Hb_000126_010 Hb_000005_220 Hb_000005_220 Hb_000126_010--Hb_000005_220 Hb_002374_010 Hb_002374_010 Hb_000126_010--Hb_002374_010 Hb_002445_100 Hb_002445_100 Hb_000126_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_000126_010--Hb_000163_220 Hb_063716_100 Hb_063716_100 Hb_000126_010--Hb_063716_100 Hb_000302_310 Hb_000302_310 Hb_000126_010--Hb_000302_310 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_000077_320 Hb_000077_320 Hb_002374_010--Hb_000077_320 Hb_002641_030 Hb_002641_030 Hb_002374_010--Hb_002641_030 Hb_002784_020 Hb_002784_020 Hb_002374_010--Hb_002784_020 Hb_011537_050 Hb_011537_050 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_002445_100--Hb_005779_010 Hb_000339_040 Hb_000339_040 Hb_002445_100--Hb_000339_040 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_000163_220--Hb_106552_020 Hb_000163_220--Hb_005779_010 Hb_028872_090 Hb_028872_090 Hb_000163_220--Hb_028872_090 Hb_005588_090 Hb_005588_090 Hb_000163_220--Hb_005588_090 Hb_005289_040 Hb_005289_040 Hb_000163_220--Hb_005289_040 Hb_000163_220--Hb_002889_010 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_002681_090 Hb_002681_090 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000035_470 Hb_000035_470 Hb_000302_310--Hb_000035_470 Hb_004319_080 Hb_004319_080 Hb_000302_310--Hb_004319_080 Hb_000302_310--Hb_000163_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66004 5.92207 8.49685 5.96547 5.94854 8.48202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.37735 8.2099 2.7852 10.4044 4.96679

CAGE analysis