Hb_000126_070

Information

Type -
Description -
Location Contig126: 146524-155725
Sequence    

Annotation

kegg
ID mdm:103421868
description probable LRR receptor-like serine/threonine-protein kinase At1g53430
nr
ID KHG22690.1
description putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID A0A0B0PCM0
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Gossypium arboreum GN=F383_04248 PE=4 SV=1
Gene Ontology
ID GO:0004715
description probable lrr receptor-like serine threonine-protein kinase rfk1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07935: 146540-146745 , PASA_asmbl_07936: 146790-147461 , PASA_asmbl_07937: 147704-149541 , PASA_asmbl_07938: 150141-151606 , PASA_asmbl_07939: 152599-155607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000126_070 0.0 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
2 Hb_002400_160 0.1133900552 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
3 Hb_002918_320 0.1179250148 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
4 Hb_005765_040 0.1266949541 - - transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_005183_140 0.129749529 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
6 Hb_002249_050 0.1320225838 - - Auxin response factor, putative [Ricinus communis]
7 Hb_000300_250 0.1339923783 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
8 Hb_000866_080 0.1406873949 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
9 Hb_000189_470 0.1424376514 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
10 Hb_001488_040 0.1438583659 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
11 Hb_004551_020 0.1440996744 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
12 Hb_001427_150 0.1457913008 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
13 Hb_004324_060 0.1458940047 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
14 Hb_008686_020 0.1469695723 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
15 Hb_004310_040 0.1479743073 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006794_020 0.1487415595 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
17 Hb_002600_080 0.1500386469 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000413_250 0.1515818063 - - Cysteine-rich RLK 29 [Theobroma cacao]
19 Hb_013358_060 0.1517827916 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
20 Hb_159295_010 0.1518182163 - - hypothetical protein RCOM_1520720 [Ricinus communis]

Gene co-expression network

sample Hb_000126_070 Hb_000126_070 Hb_002400_160 Hb_002400_160 Hb_000126_070--Hb_002400_160 Hb_002918_320 Hb_002918_320 Hb_000126_070--Hb_002918_320 Hb_005765_040 Hb_005765_040 Hb_000126_070--Hb_005765_040 Hb_005183_140 Hb_005183_140 Hb_000126_070--Hb_005183_140 Hb_002249_050 Hb_002249_050 Hb_000126_070--Hb_002249_050 Hb_000300_250 Hb_000300_250 Hb_000126_070--Hb_000300_250 Hb_002400_160--Hb_002249_050 Hb_002154_020 Hb_002154_020 Hb_002400_160--Hb_002154_020 Hb_001488_040 Hb_001488_040 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_000413_250 Hb_000413_250 Hb_002918_320--Hb_000413_250 Hb_002918_320--Hb_005765_040 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_159295_010 Hb_159295_010 Hb_005765_040--Hb_159295_010 Hb_011249_060 Hb_011249_060 Hb_005765_040--Hb_011249_060 Hb_001341_160 Hb_001341_160 Hb_005765_040--Hb_001341_160 Hb_009302_030 Hb_009302_030 Hb_005765_040--Hb_009302_030 Hb_003604_050 Hb_003604_050 Hb_005765_040--Hb_003604_050 Hb_000340_360 Hb_000340_360 Hb_005183_140--Hb_000340_360 Hb_000404_030 Hb_000404_030 Hb_005183_140--Hb_000404_030 Hb_014006_010 Hb_014006_010 Hb_005183_140--Hb_014006_010 Hb_002249_030 Hb_002249_030 Hb_005183_140--Hb_002249_030 Hb_001499_070 Hb_001499_070 Hb_005183_140--Hb_001499_070 Hb_006794_020 Hb_006794_020 Hb_005183_140--Hb_006794_020 Hb_002249_050--Hb_159295_010 Hb_002249_050--Hb_005765_040 Hb_002249_050--Hb_002154_020 Hb_000613_220 Hb_000613_220 Hb_002249_050--Hb_000613_220 Hb_002249_050--Hb_001488_040 Hb_005539_040 Hb_005539_040 Hb_000300_250--Hb_005539_040 Hb_000866_080 Hb_000866_080 Hb_000300_250--Hb_000866_080 Hb_000086_050 Hb_000086_050 Hb_000300_250--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_000300_250--Hb_007576_230 Hb_001221_090 Hb_001221_090 Hb_000300_250--Hb_001221_090 Hb_009449_090 Hb_009449_090 Hb_000300_250--Hb_009449_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.15582 18.9694 7.35757 2.37094 2.94919 4.05943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67617 1.90067 1.43253 7.66246 9.74335

CAGE analysis