Hb_000127_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig127: 43529-45563
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21690g
description POPTRDRAFT_761071; AP2 domain-containing transcription factor family protein
nr
ID XP_002306712.2
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID P93007
description Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1
trembl
ID B9H7U8
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=POPTR_0005s21690g PE=4 SV=2
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor abr1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08272: 43530-45629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_020 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_004522_040 0.146441673 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
3 Hb_000123_110 0.1688197581 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
4 Hb_002477_230 0.1789899129 - - PREDICTED: verprolin [Jatropha curcas]
5 Hb_010098_070 0.1849714111 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000029_270 0.1873387367 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
7 Hb_000163_290 0.2046659729 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
8 Hb_175445_010 0.2083379576 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
9 Hb_003253_010 0.20849926 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
10 Hb_003747_030 0.209683666 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
11 Hb_007810_050 0.210823872 - - protein with unknown function [Ricinus communis]
12 Hb_000951_060 0.2109058842 - - mads box protein, putative [Ricinus communis]
13 Hb_000789_190 0.2110824744 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
14 Hb_010098_080 0.2144702892 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
15 Hb_001478_050 0.2228082446 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
16 Hb_116349_150 0.2265973972 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
17 Hb_007849_030 0.2267543797 - - l-allo-threonine aldolase, putative [Ricinus communis]
18 Hb_001518_020 0.2268853078 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
19 Hb_006499_010 0.2272420126 - - -
20 Hb_000002_390 0.2275122259 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000127_020 Hb_000127_020 Hb_004522_040 Hb_004522_040 Hb_000127_020--Hb_004522_040 Hb_000123_110 Hb_000123_110 Hb_000127_020--Hb_000123_110 Hb_002477_230 Hb_002477_230 Hb_000127_020--Hb_002477_230 Hb_010098_070 Hb_010098_070 Hb_000127_020--Hb_010098_070 Hb_000029_270 Hb_000029_270 Hb_000127_020--Hb_000029_270 Hb_000163_290 Hb_000163_290 Hb_000127_020--Hb_000163_290 Hb_004522_040--Hb_000123_110 Hb_085659_010 Hb_085659_010 Hb_004522_040--Hb_085659_010 Hb_001186_060 Hb_001186_060 Hb_004522_040--Hb_001186_060 Hb_000107_650 Hb_000107_650 Hb_004522_040--Hb_000107_650 Hb_004522_040--Hb_000163_290 Hb_001514_190 Hb_001514_190 Hb_000123_110--Hb_001514_190 Hb_006499_010 Hb_006499_010 Hb_000123_110--Hb_006499_010 Hb_005867_040 Hb_005867_040 Hb_000123_110--Hb_005867_040 Hb_002849_210 Hb_002849_210 Hb_000123_110--Hb_002849_210 Hb_031403_010 Hb_031403_010 Hb_000123_110--Hb_031403_010 Hb_003253_010 Hb_003253_010 Hb_002477_230--Hb_003253_010 Hb_007810_050 Hb_007810_050 Hb_002477_230--Hb_007810_050 Hb_007849_030 Hb_007849_030 Hb_002477_230--Hb_007849_030 Hb_002388_060 Hb_002388_060 Hb_002477_230--Hb_002388_060 Hb_175445_010 Hb_175445_010 Hb_002477_230--Hb_175445_010 Hb_010098_080 Hb_010098_080 Hb_002477_230--Hb_010098_080 Hb_010098_070--Hb_002477_230 Hb_010098_070--Hb_007810_050 Hb_010098_070--Hb_175445_010 Hb_003073_140 Hb_003073_140 Hb_010098_070--Hb_003073_140 Hb_010098_070--Hb_007849_030 Hb_000029_270--Hb_000123_110 Hb_000029_270--Hb_005867_040 Hb_010589_110 Hb_010589_110 Hb_000029_270--Hb_010589_110 Hb_000029_270--Hb_000107_650 Hb_001766_100 Hb_001766_100 Hb_000029_270--Hb_001766_100 Hb_000163_290--Hb_006499_010 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_003747_240 Hb_003747_240 Hb_000163_290--Hb_003747_240 Hb_000371_110 Hb_000371_110 Hb_000163_290--Hb_000371_110 Hb_000163_290--Hb_001186_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
146.457 15.2407 0.812637 0.927403 22.6547 49.0259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8618 71.9998 57.8308 16.1303 0

CAGE analysis