Hb_000127_040

Information

Type -
Description -
Location Contig127: 77456-86732
Sequence    

Annotation

kegg
ID rcu:RCOM_0960640
description zinc finger protein, putative (EC:1.3.1.74)
nr
ID XP_012073953.1
description PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
swissprot
ID Q9SB58
description Protein S-acyltransferase 8 OS=Arabidopsis thaliana GN=PAT08 PE=1 SV=2
trembl
ID A0A067KKB2
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_08344 PE=3 SV=1
Gene Ontology
ID GO:0008270
description protein s-acyltransferase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08273: 77493-86846
cDNA
(Sanger)
(ID:Location)		 042_I08.ab1: 79552-86846

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_040 0.0 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
2 Hb_002213_070 0.0552505558 - - epsilon-adaptin family protein [Populus trichocarpa]
3 Hb_004935_030 0.0654980646 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
4 Hb_007803_050 0.0670314043 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
5 Hb_000457_260 0.068881673 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
6 Hb_032050_040 0.0690079571 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
7 Hb_054865_150 0.0692972894 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
8 Hb_002675_070 0.0708120135 - - PREDICTED: protein CASC3 [Jatropha curcas]
9 Hb_002235_170 0.0713044511 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
10 Hb_000613_050 0.0717021658 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
11 Hb_000789_310 0.0719131246 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
12 Hb_011037_030 0.0742692136 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
13 Hb_000347_180 0.074936641 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
14 Hb_012022_090 0.0756158206 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
15 Hb_002716_130 0.0756219749 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
16 Hb_001199_100 0.0778341942 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
17 Hb_001492_020 0.0780635541 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
18 Hb_000318_290 0.0783841778 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_002027_290 0.0787334231 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
20 Hb_000608_320 0.0804223319 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]

Gene co-expression network

sample Hb_000127_040 Hb_000127_040 Hb_002213_070 Hb_002213_070 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_001492_020 Hb_001492_020 Hb_002213_070--Hb_001492_020 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000890_210 Hb_000890_210 Hb_002213_070--Hb_000890_210 Hb_003362_070 Hb_003362_070 Hb_004935_030--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_004935_030--Hb_000457_260 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_002909_140 Hb_002909_140 Hb_007803_050--Hb_002909_140 Hb_006660_010 Hb_006660_010 Hb_007803_050--Hb_006660_010 Hb_012022_090 Hb_012022_090 Hb_007803_050--Hb_012022_090 Hb_000592_030 Hb_000592_030 Hb_007803_050--Hb_000592_030 Hb_002811_060 Hb_002811_060 Hb_007803_050--Hb_002811_060 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_003010_020 Hb_003010_020 Hb_032050_040--Hb_003010_020 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_002273_120 Hb_002273_120 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_054865_150--Hb_002110_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.08078 10.3827 6.48725 12.3912 10.5143 19.3962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8263 7.66616 11.692 10.5869 10.2279

CAGE analysis