Hb_000127_080

Information

Type -
Description -
Location Contig127: 111965-112818
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21760g
description hypothetical protein
nr
ID XP_002306717.1
description hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H7V5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08278: 111940-112608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_080 0.0 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
2 Hb_004282_010 0.1027520548 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
3 Hb_006501_100 0.105076379 - - malic enzyme, putative [Ricinus communis]
4 Hb_000956_070 0.1084489573 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
5 Hb_164117_010 0.1163739287 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
6 Hb_085315_010 0.1177971693 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
7 Hb_007632_130 0.123161057 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
8 Hb_008727_040 0.1264970173 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001040_200 0.128748299 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
10 Hb_065521_010 0.1291905414 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
11 Hb_029510_090 0.1298465749 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_001568_010 0.1301838783 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007875_020 0.1313499064 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
14 Hb_000014_080 0.1329080856 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
15 Hb_007017_100 0.138381339 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
16 Hb_004893_010 0.1391963569 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
17 Hb_019026_050 0.1392699567 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006846_030 0.1432283196 - - respiratory burst oxidase A [Manihot esculenta]
19 Hb_004785_090 0.1454911971 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
20 Hb_003913_060 0.149563597 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000127_080 Hb_000127_080 Hb_004282_010 Hb_004282_010 Hb_000127_080--Hb_004282_010 Hb_006501_100 Hb_006501_100 Hb_000127_080--Hb_006501_100 Hb_000956_070 Hb_000956_070 Hb_000127_080--Hb_000956_070 Hb_164117_010 Hb_164117_010 Hb_000127_080--Hb_164117_010 Hb_085315_010 Hb_085315_010 Hb_000127_080--Hb_085315_010 Hb_007632_130 Hb_007632_130 Hb_000127_080--Hb_007632_130 Hb_004282_010--Hb_000956_070 Hb_004282_010--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_006277_030 Hb_006277_030 Hb_004282_010--Hb_006277_030 Hb_006501_100--Hb_006277_030 Hb_006501_100--Hb_000956_070 Hb_002818_170 Hb_002818_170 Hb_006501_100--Hb_002818_170 Hb_006501_100--Hb_000014_080 Hb_002025_380 Hb_002025_380 Hb_006501_100--Hb_002025_380 Hb_000956_070--Hb_000014_080 Hb_000956_070--Hb_008727_040 Hb_000956_070--Hb_002818_170 Hb_164117_010--Hb_085315_010 Hb_032260_130 Hb_032260_130 Hb_164117_010--Hb_032260_130 Hb_004893_010 Hb_004893_010 Hb_164117_010--Hb_004893_010 Hb_116194_010 Hb_116194_010 Hb_164117_010--Hb_116194_010 Hb_019026_050 Hb_019026_050 Hb_164117_010--Hb_019026_050 Hb_085315_010--Hb_008727_040 Hb_006846_030 Hb_006846_030 Hb_085315_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_085315_010--Hb_012787_050 Hb_085315_010--Hb_004893_010 Hb_007632_130--Hb_032260_130 Hb_007632_130--Hb_006846_030 Hb_007632_130--Hb_019026_050 Hb_000120_320 Hb_000120_320 Hb_007632_130--Hb_000120_320 Hb_002553_070 Hb_002553_070 Hb_007632_130--Hb_002553_070 Hb_007632_130--Hb_164117_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139252 3.49864 5.90719 24.8777 0.206217 0.827838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.13 9.94537

CAGE analysis