Hb_000127_090

Information

Type -
Description -
Location Contig127: 115209-117187
Sequence    

Annotation

kegg
ID rcu:RCOM_0961470
description hypothetical protein
nr
ID XP_002524327.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0961470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08280: 115361-117317
cDNA
(Sanger)
(ID:Location)		 033_I16.ab1: 115459-116058 , 048_A07.ab1: 115361-117317 , 053_F20.ab1: 115426-116138

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008221_110 0.1146449918 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
3 Hb_175976_010 0.1242855624 - - -
4 Hb_166480_010 0.1431665358 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
5 Hb_000258_030 0.1475245288 - - -
6 Hb_106005_010 0.1492652429 - - EG5651 [Manihot esculenta]
7 Hb_000120_190 0.1503137892 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
8 Hb_002482_060 0.1526215763 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
9 Hb_000001_040 0.1593372611 - - unnamed protein product [Coffea canephora]
10 Hb_007545_050 0.1615475078 - - -
11 Hb_001310_070 0.1621019053 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
12 Hb_010368_030 0.1643736988 - - BnaA07g35570D [Brassica napus]
13 Hb_003919_010 0.1646799164 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_006995_040 0.1649165464 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
15 Hb_000648_030 0.1660581288 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
16 Hb_007317_060 0.1707071558 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
17 Hb_007534_020 0.1750492651 - - -
18 Hb_004807_060 0.1766728885 - - -
19 Hb_004117_180 0.1767396263 - - -
20 Hb_136731_010 0.1770011285 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000127_090 Hb_000127_090 Hb_008221_110 Hb_008221_110 Hb_000127_090--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_000127_090--Hb_175976_010 Hb_166480_010 Hb_166480_010 Hb_000127_090--Hb_166480_010 Hb_000258_030 Hb_000258_030 Hb_000127_090--Hb_000258_030 Hb_106005_010 Hb_106005_010 Hb_000127_090--Hb_106005_010 Hb_000120_190 Hb_000120_190 Hb_000127_090--Hb_000120_190 Hb_008221_110--Hb_175976_010 Hb_001017_060 Hb_001017_060 Hb_008221_110--Hb_001017_060 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_010368_030 Hb_010368_030 Hb_008221_110--Hb_010368_030 Hb_007534_020 Hb_007534_020 Hb_008221_110--Hb_007534_020 Hb_175976_010--Hb_010368_030 Hb_175976_010--Hb_007534_020 Hb_175976_010--Hb_000120_190 Hb_175976_010--Hb_001017_060 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_166480_010--Hb_000120_190 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_000258_030--Hb_175976_010 Hb_006995_040 Hb_006995_040 Hb_000258_030--Hb_006995_040 Hb_000258_030--Hb_001017_060 Hb_002284_050 Hb_002284_050 Hb_000258_030--Hb_002284_050 Hb_000258_030--Hb_008221_110 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005731_140 Hb_005731_140 Hb_106005_010--Hb_005731_140 Hb_005965_010 Hb_005965_010 Hb_106005_010--Hb_005965_010 Hb_106005_010--Hb_002482_060 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_000120_190--Hb_002482_060 Hb_000120_190--Hb_010368_030 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_006198_090 Hb_006198_090 Hb_000120_190--Hb_006198_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1008 4.22736 5.34124 59.2981 18.6042 168.659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.4565 105.89 41.1178 7.63882 5.48692

CAGE analysis