Hb_000127_110

Information

Type -
Description -
Location Contig127: 131305-132215
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08282: 131339-137903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_110 0.0 - - -
2 Hb_000127_120 0.1378559316 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011377_050 0.1379260364 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
4 Hb_001545_100 0.1415166269 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
5 Hb_002784_120 0.1432336107 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
6 Hb_000140_050 0.1582582417 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
7 Hb_003540_030 0.1606317773 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
8 Hb_119316_010 0.1708115084 - - tryptophan biosynthesis protein, putative [Ricinus communis]
9 Hb_001013_030 0.1711830789 - - GTP-binding protein yptv3, putative [Ricinus communis]
10 Hb_000479_160 0.1718115656 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
11 Hb_000292_060 0.17235984 - - transporter, putative [Ricinus communis]
12 Hb_004884_160 0.1726818122 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
13 Hb_000436_030 0.1753116599 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001946_330 0.1762526996 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
15 Hb_000483_390 0.1769345824 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
16 Hb_006711_060 0.1777965756 - - Tubulin beta-1 chain [Morus notabilis]
17 Hb_007113_070 0.180263994 - - protein with unknown function [Ricinus communis]
18 Hb_000962_050 0.1820187252 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
19 Hb_006831_120 0.182150576 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
20 Hb_026889_030 0.1840956326 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000127_110 Hb_000127_110 Hb_000127_120 Hb_000127_120 Hb_000127_110--Hb_000127_120 Hb_011377_050 Hb_011377_050 Hb_000127_110--Hb_011377_050 Hb_001545_100 Hb_001545_100 Hb_000127_110--Hb_001545_100 Hb_002784_120 Hb_002784_120 Hb_000127_110--Hb_002784_120 Hb_000140_050 Hb_000140_050 Hb_000127_110--Hb_000140_050 Hb_003540_030 Hb_003540_030 Hb_000127_110--Hb_003540_030 Hb_000292_060 Hb_000292_060 Hb_000127_120--Hb_000292_060 Hb_000127_120--Hb_011377_050 Hb_000322_140 Hb_000322_140 Hb_000127_120--Hb_000322_140 Hb_000483_390 Hb_000483_390 Hb_000127_120--Hb_000483_390 Hb_001953_090 Hb_001953_090 Hb_000127_120--Hb_001953_090 Hb_011377_050--Hb_000483_390 Hb_114310_080 Hb_114310_080 Hb_011377_050--Hb_114310_080 Hb_000019_070 Hb_000019_070 Hb_011377_050--Hb_000019_070 Hb_011377_050--Hb_000140_050 Hb_006472_050 Hb_006472_050 Hb_011377_050--Hb_006472_050 Hb_011377_050--Hb_003540_030 Hb_001545_100--Hb_003540_030 Hb_001545_100--Hb_000140_050 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_012505_010 Hb_012505_010 Hb_002784_120--Hb_012505_010 Hb_000302_220 Hb_000302_220 Hb_002784_120--Hb_000302_220 Hb_002784_120--Hb_001545_100 Hb_138585_060 Hb_138585_060 Hb_002784_120--Hb_138585_060 Hb_000975_300 Hb_000975_300 Hb_002784_120--Hb_000975_300 Hb_000140_050--Hb_003540_030 Hb_000140_050--Hb_006831_120 Hb_001776_160 Hb_001776_160 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.89447 2.97922 24.2125 25.7089 10.4507 15.9709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2357 40.0559 54.7583 2.25383 12.035

CAGE analysis