Hb_000127_120

Information

Type -
Description -
Location Contig127: 135936-136556
Sequence    

Annotation

kegg
ID rcu:RCOM_0961490
description hypothetical protein
nr
ID XP_002524329.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0961490 PE=4 SV=1
Gene Ontology
ID GO:0005886
description low affinity potassium transport system protein kup isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08282: 131339-137903 , PASA_asmbl_08283: 137327-137486
cDNA
(Sanger)
(ID:Location)		 019_O13.ab1: 136181-137846 , 028_B24.ab1: 136251-137846

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000292_060 0.1208679071 - - transporter, putative [Ricinus communis]
3 Hb_011377_050 0.1222584206 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
4 Hb_000127_110 0.1378559316 - - -
5 Hb_000322_140 0.1389428777 - - hypothetical protein RCOM_1047200 [Ricinus communis]
6 Hb_000483_390 0.14549171 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
7 Hb_001953_090 0.1492498343 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
8 Hb_020419_020 0.1554020981 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_000320_330 0.1585002628 - - uncharacterized protein LOC100527884 [Glycine max]
10 Hb_002878_010 0.1597644223 - - -
11 Hb_010449_040 0.1599323643 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
12 Hb_001638_240 0.1599509864 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
13 Hb_002324_010 0.1611982634 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
14 Hb_000479_160 0.1628017795 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
15 Hb_000436_030 0.1628414529 - - conserved hypothetical protein [Ricinus communis]
16 Hb_068056_030 0.1648504018 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
17 Hb_002182_030 0.1656176907 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
18 Hb_000300_220 0.1670126031 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
19 Hb_005278_040 0.169093466 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
20 Hb_001008_090 0.1690936881 - - cytochrome C oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000127_120 Hb_000127_120 Hb_000292_060 Hb_000292_060 Hb_000127_120--Hb_000292_060 Hb_011377_050 Hb_011377_050 Hb_000127_120--Hb_011377_050 Hb_000127_110 Hb_000127_110 Hb_000127_120--Hb_000127_110 Hb_000322_140 Hb_000322_140 Hb_000127_120--Hb_000322_140 Hb_000483_390 Hb_000483_390 Hb_000127_120--Hb_000483_390 Hb_001953_090 Hb_001953_090 Hb_000127_120--Hb_001953_090 Hb_000436_030 Hb_000436_030 Hb_000292_060--Hb_000436_030 Hb_002324_010 Hb_002324_010 Hb_000292_060--Hb_002324_010 Hb_005278_040 Hb_005278_040 Hb_000292_060--Hb_005278_040 Hb_000320_330 Hb_000320_330 Hb_000292_060--Hb_000320_330 Hb_000417_260 Hb_000417_260 Hb_000292_060--Hb_000417_260 Hb_000638_170 Hb_000638_170 Hb_000292_060--Hb_000638_170 Hb_011377_050--Hb_000483_390 Hb_114310_080 Hb_114310_080 Hb_011377_050--Hb_114310_080 Hb_000019_070 Hb_000019_070 Hb_011377_050--Hb_000019_070 Hb_000140_050 Hb_000140_050 Hb_011377_050--Hb_000140_050 Hb_006472_050 Hb_006472_050 Hb_011377_050--Hb_006472_050 Hb_003540_030 Hb_003540_030 Hb_011377_050--Hb_003540_030 Hb_000127_110--Hb_011377_050 Hb_001545_100 Hb_001545_100 Hb_000127_110--Hb_001545_100 Hb_002784_120 Hb_002784_120 Hb_000127_110--Hb_002784_120 Hb_000127_110--Hb_000140_050 Hb_000127_110--Hb_003540_030 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_002878_010 Hb_002878_010 Hb_000322_140--Hb_002878_010 Hb_000322_140--Hb_001953_090 Hb_004659_060 Hb_004659_060 Hb_000322_140--Hb_004659_060 Hb_001461_010 Hb_001461_010 Hb_000322_140--Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_000322_140--Hb_004374_140 Hb_000483_390--Hb_114310_080 Hb_003414_050 Hb_003414_050 Hb_000483_390--Hb_003414_050 Hb_000483_390--Hb_000638_170 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_003671_020 Hb_003671_020 Hb_000483_390--Hb_003671_020 Hb_028515_010 Hb_028515_010 Hb_000483_390--Hb_028515_010 Hb_001953_090--Hb_002878_010 Hb_000042_200 Hb_000042_200 Hb_001953_090--Hb_000042_200 Hb_002918_290 Hb_002918_290 Hb_001953_090--Hb_002918_290 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001284_030 Hb_001284_030 Hb_001953_090--Hb_001284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.36642 1.69484 16.5843 53.807 15.4732 29.2307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1432 83.2801 77.5632 5.7735 22.3088

CAGE analysis