Hb_000127_220

Information

Type -
Description -
Location Contig127: 294298-308587
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14330g
description hypothetical protein
nr
ID XP_011004583.1
description PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
swissprot
ID Q29Q96
description Auxin-responsive protein SAUR68 OS=Arabidopsis thaliana GN=SAUR68 PE=3 SV=1
trembl
ID F6I0U4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03470 PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08306: 305315-305524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_220 0.0 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
2 Hb_000836_310 0.076599901 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
3 Hb_012496_010 0.0961680086 - - kinase, putative [Ricinus communis]
4 Hb_000422_050 0.1034943068 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
5 Hb_000340_060 0.1038680209 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004032_220 0.1124381705 - - Calmodulin, putative [Ricinus communis]
7 Hb_001257_040 0.1127317095 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
8 Hb_113396_020 0.1171020537 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
9 Hb_007858_020 0.1332674427 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
10 Hb_000571_030 0.1346607272 - - ammonium transporter, putative [Ricinus communis]
11 Hb_106810_010 0.1351293382 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_001004_010 0.136569464 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000032_150 0.1381058608 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
14 Hb_164146_010 0.1425093409 - - -
15 Hb_006907_020 0.14267626 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
16 Hb_004586_120 0.1460003161 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_000322_020 0.1461740006 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
18 Hb_002849_030 0.1480075152 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
19 Hb_035677_010 0.150030955 - - conserved hypothetical protein [Ricinus communis]
20 Hb_029664_010 0.1507552203 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000127_220 Hb_000127_220 Hb_000836_310 Hb_000836_310 Hb_000127_220--Hb_000836_310 Hb_012496_010 Hb_012496_010 Hb_000127_220--Hb_012496_010 Hb_000422_050 Hb_000422_050 Hb_000127_220--Hb_000422_050 Hb_000340_060 Hb_000340_060 Hb_000127_220--Hb_000340_060 Hb_004032_220 Hb_004032_220 Hb_000127_220--Hb_004032_220 Hb_001257_040 Hb_001257_040 Hb_000127_220--Hb_001257_040 Hb_000836_310--Hb_004032_220 Hb_106810_010 Hb_106810_010 Hb_000836_310--Hb_106810_010 Hb_000836_310--Hb_012496_010 Hb_000836_310--Hb_000340_060 Hb_000032_150 Hb_000032_150 Hb_000836_310--Hb_000032_150 Hb_035677_010 Hb_035677_010 Hb_012496_010--Hb_035677_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_012496_010--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_002849_030 Hb_002849_030 Hb_000422_050--Hb_002849_030 Hb_000340_060--Hb_001257_040 Hb_000340_060--Hb_004032_220 Hb_008143_020 Hb_008143_020 Hb_000340_060--Hb_008143_020 Hb_007858_020 Hb_007858_020 Hb_000340_060--Hb_007858_020 Hb_004032_220--Hb_007858_020 Hb_004032_220--Hb_000032_150 Hb_124953_010 Hb_124953_010 Hb_004032_220--Hb_124953_010 Hb_004032_220--Hb_001257_040 Hb_005054_330 Hb_005054_330 Hb_004032_220--Hb_005054_330 Hb_001257_040--Hb_004586_120 Hb_001257_040--Hb_000032_150 Hb_001257_040--Hb_000322_020 Hb_001257_040--Hb_124953_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485534 17.1723 5.96275 1.44807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0699617 0.0648068 0 1.08106

CAGE analysis