Hb_000127_240

Information

Type -
Description -
Location Contig127: 333633-334001
Sequence    

Annotation

kegg
ID rcu:RCOM_0886460
description hypothetical protein
nr
ID AGW52148.1
description SAUR39 [Populus tomentosa]
swissprot
ID -
description -
trembl
ID U3Q037
description SAUR39 OS=Populus tomentosa PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08307: 333471-334143
cDNA
(Sanger)
(ID:Location)		 024_G18.ab1: 333482-334137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_240 0.0 - - SAUR39 [Populus tomentosa]
2 Hb_002030_010 0.0322382052 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
3 Hb_007760_060 0.0373712895 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
4 Hb_006614_020 0.0500769093 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
5 Hb_000375_220 0.0553170935 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
6 Hb_007576_090 0.0575458539 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
7 Hb_180535_010 0.0602398471 - - -
8 Hb_007044_240 0.0696837764 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
9 Hb_002307_140 0.0738273021 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
10 Hb_009847_010 0.0738527204 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
11 Hb_007218_050 0.0772362352 - - zinc finger protein, putative [Ricinus communis]
12 Hb_072952_010 0.078027094 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
13 Hb_000816_180 0.0781910257 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
14 Hb_000847_090 0.078632444 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
15 Hb_000375_100 0.0793655852 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
16 Hb_061336_010 0.0833206707 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000010_430 0.0860479845 - - Esterase precursor, putative [Ricinus communis]
18 Hb_000556_060 0.0866027882 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
19 Hb_004128_150 0.0909341905 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
20 Hb_000258_400 0.0929639015 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]

Gene co-expression network

sample Hb_000127_240 Hb_000127_240 Hb_002030_010 Hb_002030_010 Hb_000127_240--Hb_002030_010 Hb_007760_060 Hb_007760_060 Hb_000127_240--Hb_007760_060 Hb_006614_020 Hb_006614_020 Hb_000127_240--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_000127_240--Hb_000375_220 Hb_007576_090 Hb_007576_090 Hb_000127_240--Hb_007576_090 Hb_180535_010 Hb_180535_010 Hb_000127_240--Hb_180535_010 Hb_002030_010--Hb_006614_020 Hb_002030_010--Hb_000375_220 Hb_002030_010--Hb_007760_060 Hb_009847_010 Hb_009847_010 Hb_002030_010--Hb_009847_010 Hb_003006_070 Hb_003006_070 Hb_002030_010--Hb_003006_070 Hb_000375_100 Hb_000375_100 Hb_007760_060--Hb_000375_100 Hb_007760_060--Hb_007576_090 Hb_000010_430 Hb_000010_430 Hb_007760_060--Hb_000010_430 Hb_007760_060--Hb_180535_010 Hb_072952_010 Hb_072952_010 Hb_007760_060--Hb_072952_010 Hb_006614_020--Hb_000375_220 Hb_004128_150 Hb_004128_150 Hb_006614_020--Hb_004128_150 Hb_006614_020--Hb_007760_060 Hb_004007_050 Hb_004007_050 Hb_006614_020--Hb_004007_050 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_000375_220--Hb_003006_070 Hb_000375_220--Hb_009847_010 Hb_007576_090--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_007576_090--Hb_000816_180 Hb_061336_010 Hb_061336_010 Hb_007576_090--Hb_061336_010 Hb_007576_090--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_007576_090--Hb_007218_050 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_061336_010 Hb_180535_010--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_180535_010--Hb_002307_140 Hb_180535_010--Hb_072952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 21.761 14.9641 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.33071

CAGE analysis