Hb_000127_250

Information

Type -
Description -
Location Contig127: 338118-341176
Sequence    

Annotation

kegg
ID rcu:RCOM_0962110
description Alliin lyase precursor, putative (EC:4.4.1.4)
nr
ID XP_002524351.1
description Alliin lyase precursor, putative [Ricinus communis]
swissprot
ID Q93Z38
description Tryptophan aminotransferase-related protein 4 OS=Arabidopsis thaliana GN=TAR4 PE=2 SV=2
trembl
ID B9SED2
description Alliin lyase, putative OS=Ricinus communis GN=RCOM_0962110 PE=4 SV=1
Gene Ontology
ID GO:0016846
description alliin lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08308: 338213-339561 , PASA_asmbl_08309: 340307-340437 , PASA_asmbl_08310: 340878-341162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_250 0.0 - - Alliin lyase precursor, putative [Ricinus communis]
2 Hb_012532_020 0.058025021 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_003237_040 0.0763092749 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
4 Hb_185391_010 0.0802098359 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
5 Hb_000059_100 0.0825703627 - - Basic blue protein, putative [Ricinus communis]
6 Hb_058620_050 0.083706476 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
7 Hb_015146_010 0.0839623223 - - -
8 Hb_058620_040 0.087593679 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
9 Hb_000487_150 0.0914614595 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
10 Hb_000958_180 0.0977836126 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
11 Hb_004693_010 0.0977919513 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
12 Hb_000318_440 0.0996021764 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
13 Hb_006925_010 0.1058342064 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
14 Hb_007483_040 0.107576942 - - PREDICTED: protein SRG1-like [Jatropha curcas]
15 Hb_005614_040 0.1082722974 - - unnamed protein product [Coffea canephora]
16 Hb_000141_070 0.1092240732 - - l-lactate dehydrogenase, putative [Ricinus communis]
17 Hb_003090_070 0.109524622 - - PREDICTED: laccase-7 [Jatropha curcas]
18 Hb_019392_010 0.1105157665 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
19 Hb_148986_010 0.1136764058 - - unnamed protein product [Vitis vinifera]
20 Hb_000836_400 0.1162518726 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000127_250 Hb_000127_250 Hb_012532_020 Hb_012532_020 Hb_000127_250--Hb_012532_020 Hb_003237_040 Hb_003237_040 Hb_000127_250--Hb_003237_040 Hb_185391_010 Hb_185391_010 Hb_000127_250--Hb_185391_010 Hb_000059_100 Hb_000059_100 Hb_000127_250--Hb_000059_100 Hb_058620_050 Hb_058620_050 Hb_000127_250--Hb_058620_050 Hb_015146_010 Hb_015146_010 Hb_000127_250--Hb_015146_010 Hb_012532_020--Hb_000059_100 Hb_000487_150 Hb_000487_150 Hb_012532_020--Hb_000487_150 Hb_007320_040 Hb_007320_040 Hb_012532_020--Hb_007320_040 Hb_012532_020--Hb_185391_010 Hb_177880_010 Hb_177880_010 Hb_012532_020--Hb_177880_010 Hb_007491_010 Hb_007491_010 Hb_003237_040--Hb_007491_010 Hb_058620_040 Hb_058620_040 Hb_003237_040--Hb_058620_040 Hb_135392_010 Hb_135392_010 Hb_003237_040--Hb_135392_010 Hb_007417_020 Hb_007417_020 Hb_003237_040--Hb_007417_020 Hb_003237_040--Hb_058620_050 Hb_000958_180 Hb_000958_180 Hb_185391_010--Hb_000958_180 Hb_185391_010--Hb_015146_010 Hb_019392_010 Hb_019392_010 Hb_185391_010--Hb_019392_010 Hb_185391_010--Hb_058620_050 Hb_148986_010 Hb_148986_010 Hb_185391_010--Hb_148986_010 Hb_005614_040 Hb_005614_040 Hb_185391_010--Hb_005614_040 Hb_003090_070 Hb_003090_070 Hb_000059_100--Hb_003090_070 Hb_000059_100--Hb_005614_040 Hb_002805_230 Hb_002805_230 Hb_000059_100--Hb_002805_230 Hb_004693_010 Hb_004693_010 Hb_000059_100--Hb_004693_010 Hb_000318_440 Hb_000318_440 Hb_000059_100--Hb_000318_440 Hb_007532_050 Hb_007532_050 Hb_000059_100--Hb_007532_050 Hb_058620_050--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_058620_050--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_058620_050--Hb_003334_080 Hb_058620_050--Hb_004693_010 Hb_009568_010 Hb_009568_010 Hb_058620_050--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_058620_050--Hb_007483_040 Hb_000836_400 Hb_000836_400 Hb_015146_010--Hb_000836_400 Hb_015146_010--Hb_005614_040 Hb_015146_010--Hb_000958_180 Hb_015146_010--Hb_012532_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.505881 0.354244 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.2891 0.149661

CAGE analysis