Hb_000128_040

Information

Type -
Description -
Location Contig128: 71761-73871
Sequence    

Annotation

kegg
ID rcu:RCOM_0510330
description hypothetical protein
nr
ID XP_012081122.1
description PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16976 PE=4 SV=1
Gene Ontology
ID GO:0009535
description chlororespiratory reduction 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08663: 71779-73934
cDNA
(Sanger)
(ID:Location)		 007_A08.ab1: 71779-73564 , 036_O22.ab1: 71779-73519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000128_040 0.0 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
2 Hb_001014_240 0.0577392256 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
3 Hb_015044_010 0.0638433332 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
4 Hb_101133_030 0.0774464238 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_000359_050 0.0775016276 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_023344_090 0.0799913819 - - Photosystem II reaction center W protein, putative [Ricinus communis]
7 Hb_006267_040 0.0803842351 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
8 Hb_004920_020 0.0820740976 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
9 Hb_001343_030 0.0841807183 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
10 Hb_000962_090 0.0844934703 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
11 Hb_000300_110 0.0861679616 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
12 Hb_013726_060 0.0861783974 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
13 Hb_000866_060 0.0865731812 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
14 Hb_000340_280 0.0870327287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001488_250 0.0880550445 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005211_080 0.0886245176 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
17 Hb_001675_090 0.08963834 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
18 Hb_124677_010 0.0896739029 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001751_050 0.0904441757 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
20 Hb_012807_030 0.0925147295 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000128_040 Hb_000128_040 Hb_001014_240 Hb_001014_240 Hb_000128_040--Hb_001014_240 Hb_015044_010 Hb_015044_010 Hb_000128_040--Hb_015044_010 Hb_101133_030 Hb_101133_030 Hb_000128_040--Hb_101133_030 Hb_000359_050 Hb_000359_050 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_006267_040 Hb_006267_040 Hb_000128_040--Hb_006267_040 Hb_001014_240--Hb_015044_010 Hb_001014_240--Hb_000359_050 Hb_000962_090 Hb_000962_090 Hb_001014_240--Hb_000962_090 Hb_001014_240--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_001014_240--Hb_000340_280 Hb_015044_010--Hb_006267_040 Hb_015044_010--Hb_101133_030 Hb_000866_060 Hb_000866_060 Hb_015044_010--Hb_000866_060 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_101133_030--Hb_000340_280 Hb_000749_140 Hb_000749_140 Hb_101133_030--Hb_000749_140 Hb_101133_030--Hb_000359_050 Hb_001233_050 Hb_001233_050 Hb_101133_030--Hb_001233_050 Hb_003651_030 Hb_003651_030 Hb_101133_030--Hb_003651_030 Hb_001006_150 Hb_001006_150 Hb_000359_050--Hb_001006_150 Hb_000359_050--Hb_000962_090 Hb_000359_050--Hb_000340_280 Hb_005211_080 Hb_005211_080 Hb_000359_050--Hb_005211_080 Hb_000359_050--Hb_003651_030 Hb_001488_250 Hb_001488_250 Hb_023344_090--Hb_001488_250 Hb_005000_110 Hb_005000_110 Hb_023344_090--Hb_005000_110 Hb_000808_130 Hb_000808_130 Hb_023344_090--Hb_000808_130 Hb_001343_030 Hb_001343_030 Hb_023344_090--Hb_001343_030 Hb_000116_320 Hb_000116_320 Hb_023344_090--Hb_000116_320 Hb_006267_040--Hb_000866_060 Hb_006267_040--Hb_001014_240 Hb_000300_110 Hb_000300_110 Hb_006267_040--Hb_000300_110 Hb_174899_010 Hb_174899_010 Hb_006267_040--Hb_174899_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.40996 37.4819 10.1671 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172061 0.101506 0 1.83151 37.148

CAGE analysis