Hb_000128_060

Information

Type -
Description -
Location Contig128: 109815-116433
Sequence    

Annotation

kegg
ID vvi:100254194
description sodium/pyruvate cotransporter BASS2, chloroplastic
nr
ID XP_002284920.3
description PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
swissprot
ID Q1EBV7
description Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1
trembl
ID D7TBU8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04560 PE=4 SV=1
Gene Ontology
ID GO:0009534
description sodium pyruvate cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08668: 112850-113837 , PASA_asmbl_08669: 109876-116307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000128_060 0.0 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
2 Hb_000088_260 0.0717947669 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
3 Hb_000270_480 0.0737737604 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
4 Hb_073973_090 0.0788918707 - - Aminotransferase ybdL, putative [Ricinus communis]
5 Hb_000023_360 0.0813119476 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
6 Hb_001511_090 0.0834482993 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
7 Hb_001105_040 0.0842760929 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001141_240 0.0898170806 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
9 Hb_011671_260 0.0906096007 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
10 Hb_028487_070 0.0907246209 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001675_140 0.0921646293 - - hypothetical protein L484_026216 [Morus notabilis]
12 Hb_025194_050 0.0924379138 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
13 Hb_008705_020 0.092558916 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_006907_060 0.0927013911 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_001882_010 0.0957241479 - - -
16 Hb_000680_120 0.0969676182 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
17 Hb_001832_200 0.0974335508 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_000815_300 0.1010454059 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
19 Hb_049575_010 0.101688359 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
20 Hb_000007_090 0.1035095844 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000128_060 Hb_000128_060 Hb_000088_260 Hb_000088_260 Hb_000128_060--Hb_000088_260 Hb_000270_480 Hb_000270_480 Hb_000128_060--Hb_000270_480 Hb_073973_090 Hb_073973_090 Hb_000128_060--Hb_073973_090 Hb_000023_360 Hb_000023_360 Hb_000128_060--Hb_000023_360 Hb_001511_090 Hb_001511_090 Hb_000128_060--Hb_001511_090 Hb_001105_040 Hb_001105_040 Hb_000128_060--Hb_001105_040 Hb_000088_260--Hb_000270_480 Hb_001269_620 Hb_001269_620 Hb_000088_260--Hb_001269_620 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_025194_050 Hb_025194_050 Hb_000270_480--Hb_025194_050 Hb_001675_140 Hb_001675_140 Hb_000270_480--Hb_001675_140 Hb_007545_010 Hb_007545_010 Hb_000270_480--Hb_007545_010 Hb_000270_480--Hb_000023_360 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_002259_170 Hb_002259_170 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_001105_040--Hb_025194_050 Hb_000032_500 Hb_000032_500 Hb_001105_040--Hb_000032_500 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_008705_020 Hb_008705_020 Hb_001105_040--Hb_008705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.18777 27.4874 45.0797 42.0226 14.6233 10.4078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6267 24.893 14.5936 22.7729 50.6142

CAGE analysis