Hb_000130_030

Information

Type -
Description -
Location Contig130: 13552-13860
Sequence    

Annotation

kegg
ID egr:104431866
description small ubiquitin-related modifier 2-A-like
nr
ID XP_010042705.1
description PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
swissprot
ID Q6DHL4
description Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=3 SV=1
trembl
ID A0A0D2UW98
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G214800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_030 0.0 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
2 Hb_053373_010 0.1445129483 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_002045_200 0.2161776261 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
4 Hb_005616_030 0.220650545 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
5 Hb_003144_050 0.2224992148 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
6 Hb_028285_030 0.2263575487 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
7 Hb_135585_010 0.2319507226 - - -
8 Hb_000001_120 0.2325498707 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
9 Hb_009038_010 0.2334722938 - - latex cystatin [Hevea brasiliensis]
10 Hb_001902_120 0.2356742933 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
11 Hb_052941_010 0.242266882 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
12 Hb_005568_010 0.2476518446 - - -
13 Hb_148209_060 0.2548462126 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
14 Hb_002326_170 0.2557962213 - - Protein Z, putative [Ricinus communis]
15 Hb_128524_010 0.2558354807 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
16 Hb_088538_010 0.2613894455 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
17 Hb_002245_040 0.2658912844 - - thioredoxin h [Hevea brasiliensis]
18 Hb_003913_140 0.2677858224 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
19 Hb_000545_170 0.2725535975 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
20 Hb_173281_010 0.274105311 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000130_030 Hb_000130_030 Hb_053373_010 Hb_053373_010 Hb_000130_030--Hb_053373_010 Hb_002045_200 Hb_002045_200 Hb_000130_030--Hb_002045_200 Hb_005616_030 Hb_005616_030 Hb_000130_030--Hb_005616_030 Hb_003144_050 Hb_003144_050 Hb_000130_030--Hb_003144_050 Hb_028285_030 Hb_028285_030 Hb_000130_030--Hb_028285_030 Hb_135585_010 Hb_135585_010 Hb_000130_030--Hb_135585_010 Hb_053373_010--Hb_135585_010 Hb_128524_010 Hb_128524_010 Hb_053373_010--Hb_128524_010 Hb_053373_010--Hb_028285_030 Hb_000001_120 Hb_000001_120 Hb_053373_010--Hb_000001_120 Hb_002780_050 Hb_002780_050 Hb_053373_010--Hb_002780_050 Hb_001902_120 Hb_001902_120 Hb_002045_200--Hb_001902_120 Hb_002326_170 Hb_002326_170 Hb_002045_200--Hb_002326_170 Hb_052941_010 Hb_052941_010 Hb_002045_200--Hb_052941_010 Hb_001425_050 Hb_001425_050 Hb_002045_200--Hb_001425_050 Hb_005568_010 Hb_005568_010 Hb_002045_200--Hb_005568_010 Hb_003913_140 Hb_003913_140 Hb_002045_200--Hb_003913_140 Hb_005616_030--Hb_002780_050 Hb_008864_060 Hb_008864_060 Hb_005616_030--Hb_008864_060 Hb_001780_070 Hb_001780_070 Hb_005616_030--Hb_001780_070 Hb_000617_290 Hb_000617_290 Hb_005616_030--Hb_000617_290 Hb_001959_260 Hb_001959_260 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_173281_010 Hb_173281_010 Hb_003144_050--Hb_173281_010 Hb_148209_060 Hb_148209_060 Hb_003144_050--Hb_148209_060 Hb_088538_010 Hb_088538_010 Hb_003144_050--Hb_088538_010 Hb_003286_020 Hb_003286_020 Hb_003144_050--Hb_003286_020 Hb_104000_010 Hb_104000_010 Hb_003144_050--Hb_104000_010 Hb_028285_030--Hb_128524_010 Hb_002245_040 Hb_002245_040 Hb_028285_030--Hb_002245_040 Hb_000120_360 Hb_000120_360 Hb_028285_030--Hb_000120_360 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_135585_010--Hb_128524_010 Hb_005834_030 Hb_005834_030 Hb_135585_010--Hb_005834_030 Hb_001105_080 Hb_001105_080 Hb_135585_010--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_135585_010--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_135585_010--Hb_140618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04346 0.273801 0.395294 0 0

CAGE analysis