Hb_000130_050

Information

Type -
Description -
Location Contig130: 21738-33992
Sequence    

Annotation

kegg
ID rcu:RCOM_0341430
description 14-3-3 protein, putative
nr
ID XP_002523376.1
description 14-3-3 protein, putative [Ricinus communis]
swissprot
ID Q96453
description 14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1
trembl
ID B9SBK7
description 14-3-3 protein, putative OS=Ricinus communis GN=RCOM_0341430 PE=3 SV=1
Gene Ontology
ID GO:0019904
description 14-3-3 brain family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08871: 21683-34111 , PASA_asmbl_08872: 30165-30752
cDNA
(Sanger)
(ID:Location)		 039_K21.ab1: 21686-22619

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_050 0.0 - - 14-3-3 protein, putative [Ricinus communis]
2 Hb_000096_010 0.0859450434 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
3 Hb_001014_040 0.0887957021 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
4 Hb_000108_070 0.0916739526 - - alpha-tubulin 1 [Hevea brasiliensis]
5 Hb_000538_070 0.096378523 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
6 Hb_004079_030 0.0973226693 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
7 Hb_000161_060 0.1021443132 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
8 Hb_002005_020 0.1074504764 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006711_060 0.1092752739 - - Tubulin beta-1 chain [Morus notabilis]
10 Hb_000521_130 0.1106194106 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
11 Hb_119600_070 0.1122337853 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
12 Hb_003540_030 0.1122762822 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
13 Hb_003470_090 0.1128157913 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
14 Hb_000138_110 0.1150997955 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
15 Hb_001936_010 0.1164715704 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
16 Hb_004696_080 0.1165649069 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
17 Hb_009193_030 0.1167796632 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
18 Hb_000629_120 0.1185869419 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]
19 Hb_001897_040 0.1186008889 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
20 Hb_007765_020 0.1189872529 - - hypothetical protein JCGZ_08545 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_050 Hb_000130_050 Hb_000096_010 Hb_000096_010 Hb_000130_050--Hb_000096_010 Hb_001014_040 Hb_001014_040 Hb_000130_050--Hb_001014_040 Hb_000108_070 Hb_000108_070 Hb_000130_050--Hb_000108_070 Hb_000538_070 Hb_000538_070 Hb_000130_050--Hb_000538_070 Hb_004079_030 Hb_004079_030 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060 Hb_000096_010--Hb_000538_070 Hb_000749_220 Hb_000749_220 Hb_000096_010--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_001014_040--Hb_000108_070 Hb_001811_030 Hb_001811_030 Hb_001014_040--Hb_001811_030 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_000108_070--Hb_001811_030 Hb_000120_960 Hb_000120_960 Hb_000108_070--Hb_000120_960 Hb_119600_070 Hb_119600_070 Hb_000538_070--Hb_119600_070 Hb_001390_130 Hb_001390_130 Hb_000538_070--Hb_001390_130 Hb_000291_080 Hb_000291_080 Hb_000538_070--Hb_000291_080 Hb_009339_030 Hb_009339_030 Hb_000538_070--Hb_009339_030 Hb_003540_030 Hb_003540_030 Hb_000538_070--Hb_003540_030 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_004079_030--Hb_002005_020 Hb_004079_030--Hb_119600_070 Hb_000629_120 Hb_000629_120 Hb_000161_060--Hb_000629_120 Hb_001205_150 Hb_001205_150 Hb_000161_060--Hb_001205_150 Hb_010174_020 Hb_010174_020 Hb_000161_060--Hb_010174_020 Hb_000692_220 Hb_000692_220 Hb_000161_060--Hb_000692_220 Hb_000985_060 Hb_000985_060 Hb_000161_060--Hb_000985_060 Hb_092337_010 Hb_092337_010 Hb_000161_060--Hb_092337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3237 13.7899 28.3163 62.5682 27.7172 42.101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.4468 47.1392 106.381 36.6729 17.9035

CAGE analysis