Hb_000130_090

Information

Type -
Description -
Location Contig130: 43924-44516
Sequence    

Annotation

kegg
ID rcu:RCOM_0341650
description Anther-specific protein LAT52 precursor, putative
nr
ID XP_002523378.1
description Anther-specific protein LAT52 precursor, putative [Ricinus communis]
swissprot
ID O49813
description Olee1-like protein OS=Betula pendula PE=2 SV=1
trembl
ID B9SBK9
description Anther-specific protein LAT52, putative OS=Ricinus communis GN=RCOM_0341650 PE=4 SV=1
Gene Ontology
ID GO:0005615
description olee1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_090 0.0 - - Anther-specific protein LAT52 precursor, putative [Ricinus communis]
2 Hb_001141_290 0.3046852924 - - -
3 Hb_000003_850 0.3571427867 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
4 Hb_001124_220 0.3665850678 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
5 Hb_001208_010 0.3707524448 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
6 Hb_001633_190 0.3717844293 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
7 Hb_014720_090 0.3723827046 - - -
8 Hb_162547_010 0.3742074808 - - -
9 Hb_001247_190 0.3783377857 - - unnamed protein product [Vitis vinifera]
10 Hb_067793_010 0.3821401304 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
11 Hb_000866_250 0.3838338698 - - acyl-CoA thioesterase, putative [Ricinus communis]
12 Hb_027402_080 0.3854757522 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
13 Hb_054127_060 0.3908377956 - - hypothetical protein POPTR_0004s09330g [Populus trichocarpa]
14 Hb_007120_040 0.3924795628 - - conserved hypothetical protein [Ricinus communis]
15 Hb_094890_010 0.4019960129 - - -
16 Hb_020712_050 0.4020251088 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
17 Hb_006726_010 0.4056384373 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
18 Hb_000922_090 0.4092541052 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Populus euphratica]
19 Hb_011540_030 0.410132828 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
20 Hb_051055_010 0.4152636493 - - -

Gene co-expression network

sample Hb_000130_090 Hb_000130_090 Hb_001141_290 Hb_001141_290 Hb_000130_090--Hb_001141_290 Hb_000003_850 Hb_000003_850 Hb_000130_090--Hb_000003_850 Hb_001124_220 Hb_001124_220 Hb_000130_090--Hb_001124_220 Hb_001208_010 Hb_001208_010 Hb_000130_090--Hb_001208_010 Hb_001633_190 Hb_001633_190 Hb_000130_090--Hb_001633_190 Hb_014720_090 Hb_014720_090 Hb_000130_090--Hb_014720_090 Hb_001141_290--Hb_014720_090 Hb_000866_250 Hb_000866_250 Hb_001141_290--Hb_000866_250 Hb_094890_010 Hb_094890_010 Hb_001141_290--Hb_094890_010 Hb_003055_150 Hb_003055_150 Hb_001141_290--Hb_003055_150 Hb_011081_040 Hb_011081_040 Hb_001141_290--Hb_011081_040 Hb_001080_010 Hb_001080_010 Hb_001141_290--Hb_001080_010 Hb_001163_140 Hb_001163_140 Hb_000003_850--Hb_001163_140 Hb_020712_050 Hb_020712_050 Hb_000003_850--Hb_020712_050 Hb_000042_180 Hb_000042_180 Hb_000003_850--Hb_000042_180 Hb_003058_250 Hb_003058_250 Hb_000003_850--Hb_003058_250 Hb_002793_080 Hb_002793_080 Hb_000003_850--Hb_002793_080 Hb_051055_010 Hb_051055_010 Hb_000003_850--Hb_051055_010 Hb_162547_010 Hb_162547_010 Hb_001124_220--Hb_162547_010 Hb_003680_190 Hb_003680_190 Hb_001124_220--Hb_003680_190 Hb_002194_090 Hb_002194_090 Hb_001124_220--Hb_002194_090 Hb_000792_090 Hb_000792_090 Hb_001124_220--Hb_000792_090 Hb_000384_110 Hb_000384_110 Hb_001124_220--Hb_000384_110 Hb_126757_010 Hb_126757_010 Hb_001124_220--Hb_126757_010 Hb_067793_010 Hb_067793_010 Hb_001208_010--Hb_067793_010 Hb_001208_010--Hb_001124_220 Hb_009732_030 Hb_009732_030 Hb_001208_010--Hb_009732_030 Hb_011472_010 Hb_011472_010 Hb_001208_010--Hb_011472_010 Hb_000920_370 Hb_000920_370 Hb_001208_010--Hb_000920_370 Hb_000649_100 Hb_000649_100 Hb_001208_010--Hb_000649_100 Hb_052640_010 Hb_052640_010 Hb_001633_190--Hb_052640_010 Hb_004947_010 Hb_004947_010 Hb_001633_190--Hb_004947_010 Hb_033153_080 Hb_033153_080 Hb_001633_190--Hb_033153_080 Hb_016875_010 Hb_016875_010 Hb_001633_190--Hb_016875_010 Hb_002686_100 Hb_002686_100 Hb_001633_190--Hb_002686_100 Hb_094529_020 Hb_094529_020 Hb_001633_190--Hb_094529_020 Hb_007672_030 Hb_007672_030 Hb_014720_090--Hb_007672_030 Hb_014720_090--Hb_003055_150 Hb_163206_010 Hb_163206_010 Hb_014720_090--Hb_163206_010 Hb_014720_090--Hb_000866_250 Hb_014720_090--Hb_094890_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.324048 0.115252 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.105095 0.178115 0.0436813 0

CAGE analysis