Hb_000130_110

Information

Type -
Description -
Location Contig130: 56262-61136
Sequence    

Annotation

kegg
ID rcu:RCOM_1522360
description Small glutamine-rich tetratricopeptide repeat-containing protein A, putative
nr
ID XP_012078581.1
description PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
swissprot
ID Q9MAH1
description TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1
trembl
ID A0A067K8F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14729 PE=4 SV=1
Gene Ontology
ID GO:0005623
description tpr repeat-containing thioredoxin ttl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08883: 56027-60945 , PASA_asmbl_08886: 60950-61118
cDNA
(Sanger)
(ID:Location)		 028_O05.ab1: 59919-60623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_110 0.0 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
2 Hb_003994_190 0.1088539584 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_360 0.1162463207 - - PREDICTED: random slug protein 5 [Jatropha curcas]
4 Hb_000340_310 0.1252602916 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
5 Hb_000111_450 0.1272397638 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
6 Hb_005928_100 0.1423144531 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
7 Hb_002239_060 0.1443903405 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
8 Hb_002150_060 0.1533560667 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
9 Hb_002205_130 0.1566989625 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
10 Hb_002078_440 0.1586904664 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
11 Hb_000140_360 0.1587058839 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
12 Hb_005489_100 0.1593862372 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005224_010 0.1599790604 - - glycine-rich protein [Bruguiera gymnorhiza]
14 Hb_003540_030 0.1654745074 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
15 Hb_001102_210 0.1689726796 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
16 Hb_001545_100 0.1690846139 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
17 Hb_001096_110 0.1701993147 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
18 Hb_008760_010 0.1705993662 - - berberine bridge enzyme [Hevea brasiliensis]
19 Hb_009005_050 0.170886232 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
20 Hb_000479_160 0.1717040907 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000130_110 Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_000130_110--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000340_310 Hb_000340_310 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_003994_190--Hb_000111_450 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_003994_190--Hb_005928_100 Hb_003994_190--Hb_000340_310 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_001195_360--Hb_003994_190 Hb_001195_360--Hb_002043_050 Hb_002205_130 Hb_002205_130 Hb_001195_360--Hb_002205_130 Hb_009005_050 Hb_009005_050 Hb_001195_360--Hb_009005_050 Hb_012799_100 Hb_012799_100 Hb_001195_360--Hb_012799_100 Hb_000340_310--Hb_000111_450 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_013405_140 Hb_013405_140 Hb_000340_310--Hb_013405_140 Hb_002026_120 Hb_002026_120 Hb_000340_310--Hb_002026_120 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_002284_200 Hb_002284_200 Hb_000111_450--Hb_002284_200 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_005928_100--Hb_002043_050 Hb_005928_100--Hb_000111_450 Hb_010407_180 Hb_010407_180 Hb_005928_100--Hb_010407_180 Hb_005928_100--Hb_002284_200 Hb_000120_960 Hb_000120_960 Hb_005928_100--Hb_000120_960 Hb_001481_140 Hb_001481_140 Hb_002239_060--Hb_001481_140 Hb_002742_090 Hb_002742_090 Hb_002239_060--Hb_002742_090 Hb_093458_050 Hb_093458_050 Hb_002239_060--Hb_093458_050 Hb_003581_260 Hb_003581_260 Hb_002239_060--Hb_003581_260 Hb_001008_090 Hb_001008_090 Hb_002239_060--Hb_001008_090 Hb_000530_070 Hb_000530_070 Hb_002239_060--Hb_000530_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00963 2.09624 9.46218 9.03798 3.71524 2.68183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.79744 19.7164 36.2496 10.3427 6.22433

CAGE analysis