Hb_000130_130

Information

Type -
Description -
Location Contig130: 78437-80885
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40330g
description hypothetical protein
nr
ID XP_006370170.1
description hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GWC9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40330g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08887: 78451-95471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_130 0.0 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
2 Hb_000032_360 0.1043623201 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
3 Hb_008511_040 0.1186846097 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_000322_030 0.1233032407 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
5 Hb_006133_020 0.1366434034 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_018133_070 0.138392937 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
7 Hb_000984_150 0.1400085005 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001141_350 0.1407940089 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
9 Hb_000076_250 0.1409435223 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000227_400 0.1486466926 - - lipoxygenase, putative [Ricinus communis]
11 Hb_001221_060 0.1494881366 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
12 Hb_004330_020 0.1511681631 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
13 Hb_004447_050 0.1522019818 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
14 Hb_004994_330 0.1535699268 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000417_050 0.1537340724 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
16 Hb_000388_080 0.1567577271 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
17 Hb_001544_050 0.1584284351 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
18 Hb_002999_030 0.1598085085 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
19 Hb_004531_170 0.1607434095 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
20 Hb_000958_120 0.1614945563 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_130 Hb_000130_130 Hb_000032_360 Hb_000032_360 Hb_000130_130--Hb_000032_360 Hb_008511_040 Hb_008511_040 Hb_000130_130--Hb_008511_040 Hb_000322_030 Hb_000322_030 Hb_000130_130--Hb_000322_030 Hb_006133_020 Hb_006133_020 Hb_000130_130--Hb_006133_020 Hb_018133_070 Hb_018133_070 Hb_000130_130--Hb_018133_070 Hb_000984_150 Hb_000984_150 Hb_000130_130--Hb_000984_150 Hb_004447_050 Hb_004447_050 Hb_000032_360--Hb_004447_050 Hb_003581_230 Hb_003581_230 Hb_000032_360--Hb_003581_230 Hb_001141_350 Hb_001141_350 Hb_000032_360--Hb_001141_350 Hb_000032_360--Hb_018133_070 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000099_170 Hb_000099_170 Hb_000322_030--Hb_000099_170 Hb_000390_210 Hb_000390_210 Hb_000322_030--Hb_000390_210 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000322_030--Hb_000227_400 Hb_003020_190 Hb_003020_190 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_018133_070--Hb_006133_020 Hb_010683_030 Hb_010683_030 Hb_018133_070--Hb_010683_030 Hb_000925_150 Hb_000925_150 Hb_018133_070--Hb_000925_150 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010 Hb_000984_150--Hb_000322_030 Hb_001369_010 Hb_001369_010 Hb_000984_150--Hb_001369_010 Hb_000417_050 Hb_000417_050 Hb_000984_150--Hb_000417_050 Hb_001677_040 Hb_001677_040 Hb_000984_150--Hb_001677_040 Hb_001544_050 Hb_001544_050 Hb_000984_150--Hb_001544_050 Hb_008179_030 Hb_008179_030 Hb_000984_150--Hb_008179_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445165 2.36465 10.3858 7.90311 1.59873 0.555586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.204152 0.214031 0.386935 0.67154 6.54788

CAGE analysis