Hb_000130_170

Information

Type -
Description -
Location Contig130: 144726-144944
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08893: 132156-143901 , PASA_asmbl_08895: 144721-144854 , PASA_asmbl_08896: 144871-156493 , PASA_asmbl_08897: 144871-148482
cDNA
(Sanger)
(ID:Location)		 006_P04.ab1: 143449-143890 , 034_E20.ab1: 143449-143890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_170 0.0 - - -
2 Hb_005723_070 0.124900311 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
3 Hb_103093_010 0.1627039349 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
4 Hb_000340_330 0.1640386215 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
5 Hb_002450_130 0.1716311922 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
6 Hb_000876_010 0.185328578 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
7 Hb_005318_010 0.2006825556 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
8 Hb_002972_060 0.20087544 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_081815_010 0.2034228426 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
10 Hb_008096_020 0.2127441128 - - -
11 Hb_094132_010 0.2183246839 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
12 Hb_163132_010 0.2212683378 - - -
13 Hb_007356_010 0.2213179994 - - CTV.19 [Citrus trifoliata]
14 Hb_007290_020 0.2214891482 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
15 Hb_068804_060 0.2214956316 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
16 Hb_000300_140 0.2218228368 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_000193_030 0.2286650186 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
18 Hb_033312_110 0.2299651313 - - -
19 Hb_000683_090 0.2366658637 - - stress enhanced protein [Medicago truncatula]
20 Hb_004907_030 0.2375182297 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000130_170 Hb_000130_170 Hb_005723_070 Hb_005723_070 Hb_000130_170--Hb_005723_070 Hb_103093_010 Hb_103093_010 Hb_000130_170--Hb_103093_010 Hb_000340_330 Hb_000340_330 Hb_000130_170--Hb_000340_330 Hb_002450_130 Hb_002450_130 Hb_000130_170--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_000130_170--Hb_000876_010 Hb_005318_010 Hb_005318_010 Hb_000130_170--Hb_005318_010 Hb_005723_070--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_005723_070--Hb_002972_060 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_094132_010 Hb_094132_010 Hb_103093_010--Hb_094132_010 Hb_000193_030 Hb_000193_030 Hb_103093_010--Hb_000193_030 Hb_103093_010--Hb_000340_330 Hb_021943_070 Hb_021943_070 Hb_103093_010--Hb_021943_070 Hb_103093_010--Hb_005723_070 Hb_000340_330--Hb_002450_130 Hb_000683_090 Hb_000683_090 Hb_000340_330--Hb_000683_090 Hb_000340_330--Hb_005723_070 Hb_005318_020 Hb_005318_020 Hb_000340_330--Hb_005318_020 Hb_008096_020 Hb_008096_020 Hb_002450_130--Hb_008096_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_002450_130--Hb_000876_010 Hb_002450_130--Hb_002972_060 Hb_000876_010--Hb_002972_060 Hb_003025_060 Hb_003025_060 Hb_000876_010--Hb_003025_060 Hb_009119_010 Hb_009119_010 Hb_000876_010--Hb_009119_010 Hb_005318_010--Hb_002972_060 Hb_005318_010--Hb_005723_070 Hb_005318_010--Hb_008096_020 Hb_005318_010--Hb_021943_070 Hb_005318_010--Hb_002450_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71068 0 0 16.8525 0.489021 23.8362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.922402 1.12595 0

CAGE analysis