Hb_000130_180

Information

Type -
Description -
Location Contig130: 145187-158883
Sequence    

Annotation

kegg
ID rcu:RCOM_0530670
description hypothetical protein
nr
ID XP_012084893.1
description PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
swissprot
ID Q2H102
description GPI inositol-deacylase OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=BST1 PE=3 SV=2
trembl
ID B9SLQ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0530670 PE=4 SV=1
Gene Ontology
ID GO:0005622
description acting on ester bonds isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08895: 144721-144854 , PASA_asmbl_08896: 144871-156493 , PASA_asmbl_08897: 144871-148482 , PASA_asmbl_08898: 156496-158863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_180 0.0 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
2 Hb_001258_110 0.0727660518 - - transporter, putative [Ricinus communis]
3 Hb_001821_150 0.0744616036 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
4 Hb_001014_210 0.0774623006 - - CYP51 [Hevea brasiliensis]
5 Hb_000140_350 0.0797543766 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002284_250 0.0810978053 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
7 Hb_004531_120 0.0812666315 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
8 Hb_000960_040 0.0851640969 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
9 Hb_003671_010 0.0865445305 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
10 Hb_006856_010 0.0868942748 - - hypothetical protein CISIN_1g019592mg [Citrus sinensis]
11 Hb_000667_030 0.0883618294 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
12 Hb_000352_300 0.090961869 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
13 Hb_004102_170 0.0914219998 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
14 Hb_000146_040 0.0925447063 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
15 Hb_003683_020 0.0956016785 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_000680_110 0.0957423706 - - Endosomal P24A protein precursor, putative [Ricinus communis]
17 Hb_033286_010 0.0978567474 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
18 Hb_012518_070 0.0978885434 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_001440_020 0.098305293 - - exocyst componenet sec8, putative [Ricinus communis]
20 Hb_000784_070 0.0986185022 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000130_180 Hb_000130_180 Hb_001258_110 Hb_001258_110 Hb_000130_180--Hb_001258_110 Hb_001821_150 Hb_001821_150 Hb_000130_180--Hb_001821_150 Hb_001014_210 Hb_001014_210 Hb_000130_180--Hb_001014_210 Hb_000140_350 Hb_000140_350 Hb_000130_180--Hb_000140_350 Hb_002284_250 Hb_002284_250 Hb_000130_180--Hb_002284_250 Hb_004531_120 Hb_004531_120 Hb_000130_180--Hb_004531_120 Hb_001258_110--Hb_001014_210 Hb_001258_110--Hb_002284_250 Hb_005663_110 Hb_005663_110 Hb_001258_110--Hb_005663_110 Hb_015026_130 Hb_015026_130 Hb_001258_110--Hb_015026_130 Hb_001434_080 Hb_001434_080 Hb_001258_110--Hb_001434_080 Hb_000161_210 Hb_000161_210 Hb_001821_150--Hb_000161_210 Hb_001821_150--Hb_002284_250 Hb_003038_040 Hb_003038_040 Hb_001821_150--Hb_003038_040 Hb_007982_030 Hb_007982_030 Hb_001821_150--Hb_007982_030 Hb_003417_010 Hb_003417_010 Hb_001821_150--Hb_003417_010 Hb_003683_020 Hb_003683_020 Hb_001014_210--Hb_003683_020 Hb_009569_040 Hb_009569_040 Hb_001014_210--Hb_009569_040 Hb_000208_280 Hb_000208_280 Hb_001014_210--Hb_000208_280 Hb_007481_010 Hb_007481_010 Hb_001014_210--Hb_007481_010 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_001437_190 Hb_001437_190 Hb_002284_250--Hb_001437_190 Hb_000062_020 Hb_000062_020 Hb_002284_250--Hb_000062_020 Hb_003912_070 Hb_003912_070 Hb_002284_250--Hb_003912_070 Hb_002284_250--Hb_004531_120 Hb_000680_110 Hb_000680_110 Hb_004531_120--Hb_000680_110 Hb_000139_130 Hb_000139_130 Hb_004531_120--Hb_000139_130 Hb_004109_230 Hb_004109_230 Hb_004531_120--Hb_004109_230 Hb_004531_120--Hb_000062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46438 3.66039 2.66755 8.33735 5.44285 4.67307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50189 2.26272 2.76062 5.25241 4.16916

CAGE analysis