Hb_000130_190

Information

Type -
Description -
Location Contig130: 159727-167022
Sequence    

Annotation

kegg
ID rcu:RCOM_1216820
description Vesicle transport protein SEC20, putative
nr
ID XP_012077631.1
description PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12888 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08899: 165923-167154 , PASA_asmbl_08900: 164687-166952 , PASA_asmbl_08901: 166555-167009 , PASA_asmbl_08902: 160035-165021
cDNA
(Sanger)
(ID:Location)		 005_N10.ab1: 165932-167154 , 012_D08.ab1: 165974-167154 , 037_P21.ab1: 165923-167154

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_190 0.0 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
2 Hb_009119_030 0.1315762341 - - GMFP4 [Medicago truncatula]
3 Hb_028707_080 0.1402393434 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
4 Hb_004935_080 0.1443987364 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
5 Hb_002320_070 0.1485331086 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008029_020 0.1507474183 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
7 Hb_019053_020 0.1527334378 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
8 Hb_121467_010 0.1545233911 - - tubulin-specific chaperone E, putative [Ricinus communis]
9 Hb_058702_010 0.1572275279 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_070469_010 0.1574016356 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
11 Hb_000850_040 0.159586231 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001546_070 0.1610293272 - - Uncharacterized protein F383_19872 [Gossypium arboreum]
13 Hb_002411_130 0.165658168 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
14 Hb_126295_010 0.1662187326 - - PREDICTED: protein SEH1 [Jatropha curcas]
15 Hb_181328_010 0.1667765819 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_026228_020 0.1670023346 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
17 Hb_075764_010 0.167251872 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
18 Hb_001882_110 0.1693339874 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_000230_180 0.17095232 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
20 Hb_000087_030 0.1714641025 - - hypothetical protein JCGZ_02243 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_190 Hb_000130_190 Hb_009119_030 Hb_009119_030 Hb_000130_190--Hb_009119_030 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_004935_080 Hb_004935_080 Hb_000130_190--Hb_004935_080 Hb_002320_070 Hb_002320_070 Hb_000130_190--Hb_002320_070 Hb_008029_020 Hb_008029_020 Hb_000130_190--Hb_008029_020 Hb_019053_020 Hb_019053_020 Hb_000130_190--Hb_019053_020 Hb_009119_030--Hb_002320_070 Hb_002411_130 Hb_002411_130 Hb_009119_030--Hb_002411_130 Hb_000159_110 Hb_000159_110 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010 Hb_009851_050 Hb_009851_050 Hb_028707_080--Hb_009851_050 Hb_004306_040 Hb_004306_040 Hb_028707_080--Hb_004306_040 Hb_000230_180 Hb_000230_180 Hb_028707_080--Hb_000230_180 Hb_002498_050 Hb_002498_050 Hb_028707_080--Hb_002498_050 Hb_001546_070 Hb_001546_070 Hb_028707_080--Hb_001546_070 Hb_000664_110 Hb_000664_110 Hb_028707_080--Hb_000664_110 Hb_070469_010 Hb_070469_010 Hb_004935_080--Hb_070469_010 Hb_004935_080--Hb_002320_070 Hb_003038_220 Hb_003038_220 Hb_004935_080--Hb_003038_220 Hb_013358_100 Hb_013358_100 Hb_004935_080--Hb_013358_100 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_051437_010 Hb_051437_010 Hb_008029_020--Hb_051437_010 Hb_002235_120 Hb_002235_120 Hb_008029_020--Hb_002235_120 Hb_051424_010 Hb_051424_010 Hb_008029_020--Hb_051424_010 Hb_008029_020--Hb_019053_020 Hb_001508_020 Hb_001508_020 Hb_008029_020--Hb_001508_020 Hb_148079_010 Hb_148079_010 Hb_019053_020--Hb_148079_010 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_103760_010 Hb_103760_010 Hb_019053_020--Hb_103760_010 Hb_126295_010 Hb_126295_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92715 3.40238 2.35792 7.84318 6.60663 10.2031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.941019 2.21749 0.81776 2.68958 2.25208

CAGE analysis