Hb_000130_220

Information

Type -
Description -
Location Contig130: 185805-191289
Sequence    

Annotation

kegg
ID cic:CICLE_v10008185mg
description hypothetical protein
nr
ID XP_012074211.1
description PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9LKA5
description Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MORF8 PE=1 SV=1
trembl
ID A0A067KVJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08907: 185838-190902
cDNA
(Sanger)
(ID:Location)		 046_A05.ab1: 185838-190688

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_220 0.0 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
2 Hb_005116_050 0.0649825457 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001766_050 0.0810146778 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
4 Hb_000482_040 0.0821219361 - - Protein YME1, putative [Ricinus communis]
5 Hb_000510_290 0.0840738847 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
6 Hb_001541_120 0.0896554429 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
7 Hb_000805_100 0.0904165347 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_009778_060 0.0919215722 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
9 Hb_008033_040 0.091998099 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
10 Hb_008421_020 0.0931271938 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
11 Hb_002988_040 0.0938485975 - - -
12 Hb_001478_010 0.0996772358 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
13 Hb_001716_040 0.100060081 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
14 Hb_001195_450 0.1025767144 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
15 Hb_000640_040 0.1027042139 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
16 Hb_002542_110 0.104097046 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
17 Hb_002758_010 0.1041990772 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
18 Hb_001951_220 0.1049028715 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
19 Hb_000768_200 0.1077663772 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
20 Hb_032717_060 0.1087508974 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_220 Hb_000130_220 Hb_005116_050 Hb_005116_050 Hb_000130_220--Hb_005116_050 Hb_001766_050 Hb_001766_050 Hb_000130_220--Hb_001766_050 Hb_000482_040 Hb_000482_040 Hb_000130_220--Hb_000482_040 Hb_000510_290 Hb_000510_290 Hb_000130_220--Hb_000510_290 Hb_001541_120 Hb_001541_120 Hb_000130_220--Hb_001541_120 Hb_000805_100 Hb_000805_100 Hb_000130_220--Hb_000805_100 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_001766_050--Hb_001541_120 Hb_008421_020 Hb_008421_020 Hb_001766_050--Hb_008421_020 Hb_000928_070 Hb_000928_070 Hb_001766_050--Hb_000928_070 Hb_062226_060 Hb_062226_060 Hb_001766_050--Hb_062226_060 Hb_001662_130 Hb_001662_130 Hb_001766_050--Hb_001662_130 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_000482_040--Hb_001163_060 Hb_000614_220 Hb_000614_220 Hb_000510_290--Hb_000614_220 Hb_001322_110 Hb_001322_110 Hb_000510_290--Hb_001322_110 Hb_003020_220 Hb_003020_220 Hb_000510_290--Hb_003020_220 Hb_003038_240 Hb_003038_240 Hb_000510_290--Hb_003038_240 Hb_011689_120 Hb_011689_120 Hb_000510_290--Hb_011689_120 Hb_001541_120--Hb_000928_070 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_003943_110 Hb_003943_110 Hb_000805_100--Hb_003943_110 Hb_001716_040 Hb_001716_040 Hb_000805_100--Hb_001716_040 Hb_000567_230 Hb_000567_230 Hb_000805_100--Hb_000567_230 Hb_001478_010 Hb_001478_010 Hb_000805_100--Hb_001478_010 Hb_006913_020 Hb_006913_020 Hb_000805_100--Hb_006913_020 Hb_009296_070 Hb_009296_070 Hb_000805_100--Hb_009296_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05392 11.8315 11.43 9.47258 5.31154 7.81165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2582 17.9738 14.7583 11.2779 24.4311

CAGE analysis