Hb_000130_250

Information

Type -
Description -
Location Contig130: 213500-215415
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38580g
description POPTRDRAFT_829908; hypothetical protein
nr
ID XP_012078597.1
description PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
swissprot
ID Q1PFD9
description Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1
trembl
ID B9GGV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38580g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08916: 215147-215420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_250 0.0 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
2 Hb_061700_010 0.0714915018 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
3 Hb_000227_360 0.0746838738 - - PREDICTED: mavicyanin [Jatropha curcas]
4 Hb_011344_040 0.0758238713 - - PREDICTED: 21 kDa protein [Jatropha curcas]
5 Hb_001357_290 0.0758899246 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
6 Hb_000347_060 0.0807813618 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
7 Hb_003376_060 0.0826281385 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
8 Hb_108090_010 0.0833212731 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002662_070 0.0849718815 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
10 Hb_001456_030 0.0887622524 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
11 Hb_009476_080 0.0906968658 - - BnaA03g18920D [Brassica napus]
12 Hb_152868_020 0.0951193743 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
13 Hb_003058_240 0.0951556203 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
14 Hb_010288_010 0.0954412695 - - Beta-glucosidase, putative [Ricinus communis]
15 Hb_010172_040 0.095688798 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
16 Hb_142204_010 0.0962736951 - - pyruvate decarboxylase [Saccharum officinarum]
17 Hb_002835_360 0.096843734 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
18 Hb_002078_180 0.0970160102 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
19 Hb_003747_160 0.0990197878 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001051_060 0.1000983916 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000130_250 Hb_000130_250 Hb_061700_010 Hb_061700_010 Hb_000130_250--Hb_061700_010 Hb_000227_360 Hb_000227_360 Hb_000130_250--Hb_000227_360 Hb_011344_040 Hb_011344_040 Hb_000130_250--Hb_011344_040 Hb_001357_290 Hb_001357_290 Hb_000130_250--Hb_001357_290 Hb_000347_060 Hb_000347_060 Hb_000130_250--Hb_000347_060 Hb_003376_060 Hb_003376_060 Hb_000130_250--Hb_003376_060 Hb_108090_010 Hb_108090_010 Hb_061700_010--Hb_108090_010 Hb_000421_040 Hb_000421_040 Hb_061700_010--Hb_000421_040 Hb_142204_010 Hb_142204_010 Hb_061700_010--Hb_142204_010 Hb_000172_270 Hb_000172_270 Hb_061700_010--Hb_000172_270 Hb_000557_080 Hb_000557_080 Hb_061700_010--Hb_000557_080 Hb_000707_090 Hb_000707_090 Hb_061700_010--Hb_000707_090 Hb_000227_360--Hb_108090_010 Hb_005440_040 Hb_005440_040 Hb_000227_360--Hb_005440_040 Hb_003858_010 Hb_003858_010 Hb_000227_360--Hb_003858_010 Hb_001456_030 Hb_001456_030 Hb_000227_360--Hb_001456_030 Hb_000227_360--Hb_011344_040 Hb_000227_360--Hb_001357_290 Hb_185608_010 Hb_185608_010 Hb_011344_040--Hb_185608_010 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_011344_040--Hb_003858_010 Hb_011344_040--Hb_001357_290 Hb_057862_010 Hb_057862_010 Hb_011344_040--Hb_057862_010 Hb_001357_290--Hb_000347_060 Hb_001357_290--Hb_061700_010 Hb_000392_350 Hb_000392_350 Hb_001357_290--Hb_000392_350 Hb_002662_070 Hb_002662_070 Hb_000347_060--Hb_002662_070 Hb_010166_010 Hb_010166_010 Hb_000347_060--Hb_010166_010 Hb_005686_040 Hb_005686_040 Hb_000347_060--Hb_005686_040 Hb_001935_060 Hb_001935_060 Hb_000347_060--Hb_001935_060 Hb_010288_010 Hb_010288_010 Hb_000347_060--Hb_010288_010 Hb_001377_220 Hb_001377_220 Hb_000347_060--Hb_001377_220 Hb_003376_060--Hb_001456_030 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_000964_080 Hb_000964_080 Hb_003376_060--Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_003376_060--Hb_000413_030 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.186102 1.6313 12.3193 0 0.0159262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0522421 0.100512 7.09403

CAGE analysis