Hb_000130_350

Information

Type -
Description -
Location Contig130: 313979-318433
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09880g
description POPTRDRAFT_660696; hypothetical protein
nr
ID XP_012074225.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067KWS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09839 PE=4 SV=1
Gene Ontology
ID GO:0045491
description protein iq-domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08929: 315227-315643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_350 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_116701_010 0.0756108222 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
3 Hb_158092_050 0.0923994451 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
4 Hb_031284_060 0.1024159023 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
5 Hb_000173_240 0.1030933405 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008762_010 0.1044484403 - - dopamine beta-monooxygenase, putative [Ricinus communis]
7 Hb_000428_040 0.1205333683 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
8 Hb_008461_060 0.1274386466 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
9 Hb_000193_320 0.1290098402 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002078_180 0.1306729133 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
11 Hb_000173_140 0.1330428157 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
12 Hb_001366_110 0.1347417858 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000236_230 0.1402404677 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
14 Hb_001935_060 0.1407213503 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
15 Hb_000347_060 0.1410575048 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
16 Hb_038927_020 0.1412533228 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
17 Hb_010166_010 0.1416543737 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
18 Hb_005686_040 0.1425809014 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001189_080 0.1432682132 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001080_240 0.1438442125 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000130_350 Hb_000130_350 Hb_116701_010 Hb_116701_010 Hb_000130_350--Hb_116701_010 Hb_158092_050 Hb_158092_050 Hb_000130_350--Hb_158092_050 Hb_031284_060 Hb_031284_060 Hb_000130_350--Hb_031284_060 Hb_000173_240 Hb_000173_240 Hb_000130_350--Hb_000173_240 Hb_008762_010 Hb_008762_010 Hb_000130_350--Hb_008762_010 Hb_000428_040 Hb_000428_040 Hb_000130_350--Hb_000428_040 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_000428_040 Hb_116701_010--Hb_008762_010 Hb_116701_010--Hb_000173_240 Hb_001366_110 Hb_001366_110 Hb_116701_010--Hb_001366_110 Hb_158092_050--Hb_000173_240 Hb_008461_060 Hb_008461_060 Hb_158092_050--Hb_008461_060 Hb_158092_050--Hb_031284_060 Hb_000193_320 Hb_000193_320 Hb_158092_050--Hb_000193_320 Hb_031284_060--Hb_000193_320 Hb_000328_030 Hb_000328_030 Hb_031284_060--Hb_000328_030 Hb_001712_030 Hb_001712_030 Hb_031284_060--Hb_001712_030 Hb_005523_030 Hb_005523_030 Hb_031284_060--Hb_005523_030 Hb_002078_180 Hb_002078_180 Hb_031284_060--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_031284_060--Hb_000086_490 Hb_000173_240--Hb_002078_180 Hb_000173_240--Hb_000193_320 Hb_009476_080 Hb_009476_080 Hb_000173_240--Hb_009476_080 Hb_002835_360 Hb_002835_360 Hb_000173_240--Hb_002835_360 Hb_001935_060 Hb_001935_060 Hb_000173_240--Hb_001935_060 Hb_005686_040 Hb_005686_040 Hb_000173_240--Hb_005686_040 Hb_008762_010--Hb_031284_060 Hb_001189_080 Hb_001189_080 Hb_008762_010--Hb_001189_080 Hb_008762_010--Hb_158092_050 Hb_008762_010--Hb_005523_030 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_000236_230 Hb_000236_230 Hb_000428_040--Hb_000236_230 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.277535 0.723631 1.61148 26.2263 0.248467 0.545101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.531742 0.15938 0.414345 0.214228 19.0114

CAGE analysis