Hb_000130_370

Information

Type -
Description -
Location Contig130: 321932-323696
Sequence    

Annotation

kegg
ID rcu:RCOM_0519350
description hypothetical protein
nr
ID XP_012074214.1
description PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09838 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_370 0.0 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
2 Hb_000082_080 0.161937078 - - putative polyol transporter protein 1 [Hevea brasiliensis]
3 Hb_004077_030 0.1988949554 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
4 Hb_000345_030 0.2008622454 - - REF-like stress related protein 1 [Hevea brasiliensis]
5 Hb_000345_040 0.2015335454 rubber biosynthesis Gene Name: REF4 -
6 Hb_004659_120 0.2045635552 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
7 Hb_111648_010 0.2080663747 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
8 Hb_005128_040 0.2117183573 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006831_010 0.2129700434 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_024505_040 0.2239645794 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
11 Hb_023226_090 0.225626099 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
12 Hb_000206_220 0.228067788 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
13 Hb_048141_010 0.2284905763 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
14 Hb_001631_070 0.2309982228 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_006070_010 0.2323590404 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
16 Hb_000012_230 0.2342477756 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
17 Hb_002154_050 0.2348852333 - - RNA binding protein, putative [Ricinus communis]
18 Hb_002000_110 0.2349135085 - - ASR-like protein 2 [Hevea brasiliensis]
19 Hb_099069_010 0.2353285661 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
20 Hb_002352_010 0.2358202206 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_370 Hb_000130_370 Hb_000082_080 Hb_000082_080 Hb_000130_370--Hb_000082_080 Hb_004077_030 Hb_004077_030 Hb_000130_370--Hb_004077_030 Hb_000345_030 Hb_000345_030 Hb_000130_370--Hb_000345_030 Hb_000345_040 Hb_000345_040 Hb_000130_370--Hb_000345_040 Hb_004659_120 Hb_004659_120 Hb_000130_370--Hb_004659_120 Hb_111648_010 Hb_111648_010 Hb_000130_370--Hb_111648_010 Hb_002154_050 Hb_002154_050 Hb_000082_080--Hb_002154_050 Hb_005167_040 Hb_005167_040 Hb_000082_080--Hb_005167_040 Hb_000082_080--Hb_004659_120 Hb_005539_290 Hb_005539_290 Hb_000082_080--Hb_005539_290 Hb_006831_010 Hb_006831_010 Hb_000082_080--Hb_006831_010 Hb_000184_040 Hb_000184_040 Hb_000082_080--Hb_000184_040 Hb_000012_230 Hb_000012_230 Hb_004077_030--Hb_000012_230 Hb_004077_030--Hb_000345_030 Hb_001584_300 Hb_001584_300 Hb_004077_030--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_004077_030--Hb_009265_060 Hb_012423_050 Hb_012423_050 Hb_004077_030--Hb_012423_050 Hb_002539_080 Hb_002539_080 Hb_004077_030--Hb_002539_080 Hb_000345_030--Hb_000345_040 Hb_006132_060 Hb_006132_060 Hb_000345_030--Hb_006132_060 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090 Hb_000345_040--Hb_006831_010 Hb_000345_040--Hb_006132_060 Hb_010174_120 Hb_010174_120 Hb_000345_040--Hb_010174_120 Hb_000345_040--Hb_004659_120 Hb_024505_040 Hb_024505_040 Hb_000345_040--Hb_024505_040 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_004659_120--Hb_010174_120 Hb_001514_180 Hb_001514_180 Hb_111648_010--Hb_001514_180 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_000041_070 Hb_000041_070 Hb_111648_010--Hb_000041_070 Hb_000078_010 Hb_000078_010 Hb_111648_010--Hb_000078_010 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.589927 0 0 0.378854 0.256671 0.92396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80252 0.257744 1.33866 0.12111 0

CAGE analysis