Hb_000130_390

Information

Type -
Description -
Location Contig130: 342189-346772
Sequence    

Annotation

kegg
ID pxb:103933288
description glutamate receptor 2.8-like
nr
ID XP_009341245.1
description PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
swissprot
ID Q9C5V5
description Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2
trembl
ID A0A061F835
description Glutamate receptor 2.7, putative OS=Theobroma cacao GN=TCM_031691 PE=4 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_390 0.0 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
2 Hb_003018_180 0.0858315822 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
3 Hb_000957_040 0.0869397754 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_002298_040 0.1063483238 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
5 Hb_012347_010 0.1069461304 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
6 Hb_001140_160 0.1130163931 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_005016_130 0.1148513701 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
8 Hb_010872_060 0.1183389761 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
9 Hb_003540_230 0.1188105851 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
10 Hb_000580_170 0.1205169303 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
11 Hb_010578_090 0.1210332194 - - HEV2.1 [Hevea brasiliensis]
12 Hb_124315_040 0.1226133967 - - hypothetical protein 19 [Hevea brasiliensis]
13 Hb_012799_060 0.1236862132 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_000078_030 0.1242645847 - - conserved hypothetical protein [Ricinus communis]
15 Hb_029584_140 0.1244052045 - - senescence-associated family protein [Populus trichocarpa]
16 Hb_001109_120 0.1290769811 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
17 Hb_000762_020 0.1312982351 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
18 Hb_000284_010 0.132830271 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_002221_080 0.1357624131 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
20 Hb_030765_020 0.1373406903 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000130_390 Hb_000130_390 Hb_003018_180 Hb_003018_180 Hb_000130_390--Hb_003018_180 Hb_000957_040 Hb_000957_040 Hb_000130_390--Hb_000957_040 Hb_002298_040 Hb_002298_040 Hb_000130_390--Hb_002298_040 Hb_012347_010 Hb_012347_010 Hb_000130_390--Hb_012347_010 Hb_001140_160 Hb_001140_160 Hb_000130_390--Hb_001140_160 Hb_005016_130 Hb_005016_130 Hb_000130_390--Hb_005016_130 Hb_003018_180--Hb_001140_160 Hb_003018_180--Hb_000957_040 Hb_003018_180--Hb_002298_040 Hb_004545_150 Hb_004545_150 Hb_003018_180--Hb_004545_150 Hb_001780_060 Hb_001780_060 Hb_003018_180--Hb_001780_060 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_012347_010 Hb_010872_060 Hb_010872_060 Hb_000957_040--Hb_010872_060 Hb_002027_300 Hb_002027_300 Hb_000957_040--Hb_002027_300 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002298_040--Hb_000284_010 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_115919_020 Hb_115919_020 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_010578_090 Hb_005016_130--Hb_000284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84064 0.114357 0.0428984 0.0979414 2.02903 1.8698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19957 2.21471 2.34212 0.372406 0.10661

CAGE analysis