Hb_000130_410

Information

Type -
Description -
Location Contig130: 357482-371938
Sequence    

Annotation

kegg
ID rcu:RCOM_1743730
description hypothetical protein
nr
ID XP_012074207.1
description PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08940: 357510-371815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_410 0.0 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
2 Hb_000318_250 0.0634243599 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
3 Hb_002026_210 0.07037367 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_001396_200 0.0705614079 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
5 Hb_000708_030 0.0720700252 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
6 Hb_004324_130 0.0723982372 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_001546_080 0.0739284788 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
8 Hb_000181_400 0.0740359348 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
9 Hb_006831_140 0.0742036886 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_007123_030 0.0751455369 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
11 Hb_000907_110 0.0751801133 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
12 Hb_003494_200 0.0753421804 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
13 Hb_000227_090 0.0760340185 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
14 Hb_000732_010 0.0770458101 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
15 Hb_028512_020 0.077409551 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
16 Hb_000030_190 0.0786382712 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
17 Hb_000028_370 0.0786819195 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
18 Hb_167498_010 0.0790616497 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
19 Hb_002110_190 0.0794313714 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
20 Hb_000868_090 0.0797936074 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_410 Hb_000130_410 Hb_000318_250 Hb_000318_250 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080 Hb_000318_250--Hb_001546_080 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000317_050 Hb_000317_050 Hb_000318_250--Hb_000317_050 Hb_000329_710 Hb_000329_710 Hb_000318_250--Hb_000329_710 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_001396_200--Hb_000868_090 Hb_007035_050 Hb_007035_050 Hb_001396_200--Hb_007035_050 Hb_008959_020 Hb_008959_020 Hb_001396_200--Hb_008959_020 Hb_001114_140 Hb_001114_140 Hb_001396_200--Hb_001114_140 Hb_007765_110 Hb_007765_110 Hb_001396_200--Hb_007765_110 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_004324_130--Hb_006831_140 Hb_001546_080--Hb_000317_050 Hb_003030_060 Hb_003030_060 Hb_001546_080--Hb_003030_060 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86895 7.31091 4.07648 5.72359 6.23052 6.81023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.23163 6.16812 4.28894 6.62588 5.65676

CAGE analysis