Hb_000130_460

Information

Type -
Description -
Location Contig130: 408965-410439
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10000g
description POPTRDRAFT_235083; hypothetical protein
nr
ID KDP45852.1
description hypothetical protein JCGZ_15296 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08947: 407386-408384 , PASA_asmbl_08948: 409999-410266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_460 0.0 - - hypothetical protein JCGZ_15296 [Jatropha curcas]
2 Hb_003894_110 0.1038202395 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
3 Hb_009486_050 0.1041609615 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
4 Hb_001021_120 0.1054780983 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
5 Hb_152910_050 0.1065634206 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
6 Hb_017434_010 0.108091691 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_003376_020 0.1082058268 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_007617_010 0.109987884 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_000009_270 0.1113582481 - - Calmodulin, putative [Ricinus communis]
10 Hb_000333_020 0.111444194 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
11 Hb_004137_040 0.1117157002 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
12 Hb_001544_090 0.1118185662 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_000003_380 0.1120028781 - - conserved hypothetical protein [Ricinus communis]
14 Hb_098315_060 0.1125523855 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
15 Hb_002411_090 0.1130921836 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
16 Hb_000483_450 0.1134913726 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
17 Hb_000134_130 0.1154448184 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
18 Hb_040852_010 0.1157146677 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001817_210 0.1159614416 - - conserved hypothetical protein [Ricinus communis]
20 Hb_031321_020 0.1165198988 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]

Gene co-expression network

sample Hb_000130_460 Hb_000130_460 Hb_003894_110 Hb_003894_110 Hb_000130_460--Hb_003894_110 Hb_009486_050 Hb_009486_050 Hb_000130_460--Hb_009486_050 Hb_001021_120 Hb_001021_120 Hb_000130_460--Hb_001021_120 Hb_152910_050 Hb_152910_050 Hb_000130_460--Hb_152910_050 Hb_017434_010 Hb_017434_010 Hb_000130_460--Hb_017434_010 Hb_003376_020 Hb_003376_020 Hb_000130_460--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_003894_110--Hb_040852_010 Hb_003894_110--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003894_110--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003894_110--Hb_000134_130 Hb_003894_110--Hb_003376_020 Hb_004202_020 Hb_004202_020 Hb_003894_110--Hb_004202_020 Hb_002609_120 Hb_002609_120 Hb_009486_050--Hb_002609_120 Hb_000009_270 Hb_000009_270 Hb_009486_050--Hb_000009_270 Hb_000005_240 Hb_000005_240 Hb_009486_050--Hb_000005_240 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_001638_200 Hb_001638_200 Hb_009486_050--Hb_001638_200 Hb_001021_120--Hb_000009_270 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_001021_120--Hb_152910_050 Hb_001021_120--Hb_098315_060 Hb_152910_050--Hb_040852_010 Hb_152910_050--Hb_098315_060 Hb_152910_050--Hb_000134_130 Hb_152910_050--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_152910_050--Hb_000103_220 Hb_017434_010--Hb_000103_220 Hb_017434_010--Hb_098315_060 Hb_017434_010--Hb_000009_270 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_017434_010--Hb_001021_120 Hb_003376_020--Hb_040852_010 Hb_003376_020--Hb_152910_050 Hb_003376_020--Hb_098315_060 Hb_003376_020--Hb_000134_130 Hb_003376_020--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141863 2.24019 2.51705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.122346 0 0.0248598 1.45679

CAGE analysis