Hb_000133_060

Information

Type -
Description -
Location Contig133: 125188-126012
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16050g
description POPTRDRAFT_767059; harpin-induced family protein
nr
ID XP_012066280.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID A0A067LFL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000133_060 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_007407_010 0.0771566368 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
3 Hb_002205_260 0.1065593192 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
4 Hb_000110_330 0.110665821 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
5 Hb_012545_080 0.111575161 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
6 Hb_019961_010 0.1149335098 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
7 Hb_174380_010 0.1161277981 - - kinase, putative [Ricinus communis]
8 Hb_018043_010 0.1164241514 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
9 Hb_133845_010 0.1198324294 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_005605_030 0.1225612362 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
11 Hb_009683_010 0.1266299989 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_022206_030 0.1280887099 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_001289_030 0.1321806835 - - syntaxin, plant, putative [Ricinus communis]
14 Hb_004267_070 0.1353790978 - - latex allene oxide synthase [Hevea brasiliensis]
15 Hb_005357_270 0.135576334 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_019654_010 0.1355777041 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_009083_010 0.1358936456 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
18 Hb_000322_120 0.1424294873 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
19 Hb_007433_020 0.1426671712 - - hypothetical protein VITISV_005320 [Vitis vinifera]
20 Hb_127400_010 0.1427378437 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000133_060 Hb_000133_060 Hb_007407_010 Hb_007407_010 Hb_000133_060--Hb_007407_010 Hb_002205_260 Hb_002205_260 Hb_000133_060--Hb_002205_260 Hb_000110_330 Hb_000110_330 Hb_000133_060--Hb_000110_330 Hb_012545_080 Hb_012545_080 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_174380_010 Hb_174380_010 Hb_000133_060--Hb_174380_010 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_007407_010--Hb_000110_330 Hb_007407_010--Hb_002205_260 Hb_009683_010 Hb_009683_010 Hb_007407_010--Hb_009683_010 Hb_007407_010--Hb_012545_080 Hb_002205_260--Hb_012545_080 Hb_001289_030 Hb_001289_030 Hb_002205_260--Hb_001289_030 Hb_002660_090 Hb_002660_090 Hb_002205_260--Hb_002660_090 Hb_089140_020 Hb_089140_020 Hb_002205_260--Hb_089140_020 Hb_012404_050 Hb_012404_050 Hb_000110_330--Hb_012404_050 Hb_041145_010 Hb_041145_010 Hb_000110_330--Hb_041145_010 Hb_000110_330--Hb_012545_080 Hb_005357_270 Hb_005357_270 Hb_000110_330--Hb_005357_270 Hb_000996_200 Hb_000996_200 Hb_012545_080--Hb_000996_200 Hb_012545_080--Hb_005357_270 Hb_012545_080--Hb_009683_010 Hb_012545_080--Hb_012404_050 Hb_012702_010 Hb_012702_010 Hb_019961_010--Hb_012702_010 Hb_138628_010 Hb_138628_010 Hb_019961_010--Hb_138628_010 Hb_002272_140 Hb_002272_140 Hb_019961_010--Hb_002272_140 Hb_007433_020 Hb_007433_020 Hb_019961_010--Hb_007433_020 Hb_008667_020 Hb_008667_020 Hb_019961_010--Hb_008667_020 Hb_009083_010 Hb_009083_010 Hb_174380_010--Hb_009083_010 Hb_006634_080 Hb_006634_080 Hb_174380_010--Hb_006634_080 Hb_117127_010 Hb_117127_010 Hb_174380_010--Hb_117127_010 Hb_000338_030 Hb_000338_030 Hb_174380_010--Hb_000338_030 Hb_174380_010--Hb_012545_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254277 161.021 35.821 34.2258 0.132164 0.241589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259198 0.917167 0.277274 25.0529 0.307772

CAGE analysis