Hb_000133_070

Information

Type -
Description -
Location Contig133: 218680-225282
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000133_070 0.0 - - -
2 Hb_008778_010 0.2318539859 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_151463_010 0.2351223494 - - hypothetical protein B456_004G013100 [Gossypium raimondii]
4 Hb_131035_010 0.2432117975 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000334_180 0.2438113399 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
6 Hb_002947_020 0.2467465293 - - PREDICTED: uncharacterized protein LOC103330439 [Prunus mume]
7 Hb_001767_130 0.2467707243 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
8 Hb_003073_170 0.2511689378 - - -
9 Hb_002110_040 0.2529176693 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
10 Hb_002102_030 0.2552880401 - - -
11 Hb_000739_080 0.2572901574 - - PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]
12 Hb_002666_020 0.2627276927 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
13 Hb_138462_010 0.2637791127 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
14 Hb_005333_190 0.2638678381 - - PREDICTED: AP-4 complex subunit mu isoform X2 [Populus euphratica]
15 Hb_144096_010 0.2665749719 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_081517_010 0.266685143 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
17 Hb_000679_200 0.2682998302 - - EIN3-binding F box protein 1 [Theobroma cacao]
18 Hb_001278_040 0.2740454048 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
19 Hb_000566_030 0.2752351979 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
20 Hb_018118_030 0.2779405235 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_000133_070 Hb_000133_070 Hb_008778_010 Hb_008778_010 Hb_000133_070--Hb_008778_010 Hb_151463_010 Hb_151463_010 Hb_000133_070--Hb_151463_010 Hb_131035_010 Hb_131035_010 Hb_000133_070--Hb_131035_010 Hb_000334_180 Hb_000334_180 Hb_000133_070--Hb_000334_180 Hb_002947_020 Hb_002947_020 Hb_000133_070--Hb_002947_020 Hb_001767_130 Hb_001767_130 Hb_000133_070--Hb_001767_130 Hb_008778_010--Hb_000334_180 Hb_004899_060 Hb_004899_060 Hb_008778_010--Hb_004899_060 Hb_002035_080 Hb_002035_080 Hb_008778_010--Hb_002035_080 Hb_005976_050 Hb_005976_050 Hb_008778_010--Hb_005976_050 Hb_089206_010 Hb_089206_010 Hb_008778_010--Hb_089206_010 Hb_000566_030 Hb_000566_030 Hb_008778_010--Hb_000566_030 Hb_003073_170 Hb_003073_170 Hb_151463_010--Hb_003073_170 Hb_054885_010 Hb_054885_010 Hb_151463_010--Hb_054885_010 Hb_003157_030 Hb_003157_030 Hb_151463_010--Hb_003157_030 Hb_001351_080 Hb_001351_080 Hb_151463_010--Hb_001351_080 Hb_003376_070 Hb_003376_070 Hb_151463_010--Hb_003376_070 Hb_000035_200 Hb_000035_200 Hb_131035_010--Hb_000035_200 Hb_002192_030 Hb_002192_030 Hb_131035_010--Hb_002192_030 Hb_007286_020 Hb_007286_020 Hb_131035_010--Hb_007286_020 Hb_001500_110 Hb_001500_110 Hb_131035_010--Hb_001500_110 Hb_027760_070 Hb_027760_070 Hb_131035_010--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_131035_010--Hb_146081_010 Hb_000334_180--Hb_000566_030 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_002947_020--Hb_000334_180 Hb_004462_010 Hb_004462_010 Hb_002947_020--Hb_004462_010 Hb_002947_020--Hb_003073_170 Hb_002666_020 Hb_002666_020 Hb_002947_020--Hb_002666_020 Hb_034337_010 Hb_034337_010 Hb_002947_020--Hb_034337_010 Hb_088163_010 Hb_088163_010 Hb_001767_130--Hb_088163_010 Hb_002102_030 Hb_002102_030 Hb_001767_130--Hb_002102_030 Hb_001767_130--Hb_000035_200 Hb_001767_130--Hb_131035_010 Hb_002148_020 Hb_002148_020 Hb_001767_130--Hb_002148_020 Hb_003925_020 Hb_003925_020 Hb_001767_130--Hb_003925_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.43088 8.49496 1.33345 24.6575 6.25893 12.8331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.387284 0.305163 12.0642 10.9225 0.467475

CAGE analysis