Hb_000133_090

Information

Type -
Description -
Location Contig133: 326914-342341
Sequence    

Annotation

kegg
ID rcu:RCOM_1111800
description hypothetical protein
nr
ID XP_012066281.1
description PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23842 PE=4 SV=1
Gene Ontology
ID GO:0005622
description bzip transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09459: 328067-328442 , PASA_asmbl_09460: 328805-329260 , PASA_asmbl_09461: 329503-342140 , PASA_asmbl_09462: 329539-339829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000133_090 0.0 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
2 Hb_000243_400 0.0763741501 - - PREDICTED: nucleolin-like [Jatropha curcas]
3 Hb_000413_250 0.0890782256 - - Cysteine-rich RLK 29 [Theobroma cacao]
4 Hb_000331_100 0.0911043836 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
5 Hb_006794_020 0.0947931196 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
6 Hb_000072_020 0.0989560494 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
7 Hb_003964_110 0.0999281093 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
8 Hb_002005_030 0.1040079611 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_000227_320 0.1047488248 - - unnamed protein product [Vitis vinifera]
10 Hb_001646_010 0.105488587 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
11 Hb_004696_070 0.1096685097 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
12 Hb_000200_110 0.111971593 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
13 Hb_001259_120 0.1159872874 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
14 Hb_143629_020 0.1164555917 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
15 Hb_159295_010 0.1166013832 - - hypothetical protein RCOM_1520720 [Ricinus communis]
16 Hb_033363_010 0.116614767 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
17 Hb_002918_320 0.118153737 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
18 Hb_000059_130 0.1199369024 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
19 Hb_000665_260 0.1199631842 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
20 Hb_005765_040 0.1208190717 - - transcription elongation factor s-II, putative [Ricinus communis]

Gene co-expression network

sample Hb_000133_090 Hb_000133_090 Hb_000243_400 Hb_000243_400 Hb_000133_090--Hb_000243_400 Hb_000413_250 Hb_000413_250 Hb_000133_090--Hb_000413_250 Hb_000331_100 Hb_000331_100 Hb_000133_090--Hb_000331_100 Hb_006794_020 Hb_006794_020 Hb_000133_090--Hb_006794_020 Hb_000072_020 Hb_000072_020 Hb_000133_090--Hb_000072_020 Hb_003964_110 Hb_003964_110 Hb_000133_090--Hb_003964_110 Hb_004586_090 Hb_004586_090 Hb_000243_400--Hb_004586_090 Hb_000200_110 Hb_000200_110 Hb_000243_400--Hb_000200_110 Hb_000243_400--Hb_000413_250 Hb_143629_020 Hb_143629_020 Hb_000243_400--Hb_143629_020 Hb_000243_400--Hb_006794_020 Hb_002918_320 Hb_002918_320 Hb_000413_250--Hb_002918_320 Hb_004696_070 Hb_004696_070 Hb_000413_250--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_000413_250--Hb_001951_100 Hb_000413_250--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000331_100--Hb_008165_020 Hb_000428_030 Hb_000428_030 Hb_000331_100--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120 Hb_006794_020--Hb_013358_060 Hb_006794_020--Hb_143629_020 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_006794_020--Hb_000331_100 Hb_000270_700 Hb_000270_700 Hb_006794_020--Hb_000270_700 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_003964_110--Hb_008165_020 Hb_003964_110--Hb_000227_320 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54991 22.644 10.3469 13.1373 7.30853 4.23046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40631 2.18896 3.34641 16.1157 12.233

CAGE analysis