Hb_000134_020

Information

Type -
Description -
Location Contig134: 15471-16686
Sequence    

Annotation

kegg
ID rcu:RCOM_1526930
description electron transporter, putative
nr
ID ADR70873.1
description thioredoxin-like family protein [Hevea brasiliensis]
swissprot
ID Q9FMN4
description Thioredoxin-like protein Clot OS=Arabidopsis thaliana GN=At5g42850 PE=2 SV=1
trembl
ID V5IV21
description Thioredoxin-like family protein OS=Hevea brasiliensis GN=Trxl1 PE=2 SV=1
Gene Ontology
ID GO:0016740
description thioredoxin-like protein clot

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09581: 15428-15718 , PASA_asmbl_09583: 15454-16830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_020 0.0 - - thioredoxin-like family protein [Hevea brasiliensis]
2 Hb_000645_190 0.0883439316 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
3 Hb_011310_060 0.0897380179 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
4 Hb_003988_040 0.0947584845 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
5 Hb_002293_030 0.1054639417 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
6 Hb_003058_220 0.1072257668 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
7 Hb_003638_080 0.1076312447 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
8 Hb_002897_080 0.1101182253 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
9 Hb_000236_460 0.116260141 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
10 Hb_003549_020 0.1172134792 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010810_020 0.1195354002 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
12 Hb_000526_150 0.1196367611 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
13 Hb_001214_140 0.1198303786 - - 60S ribosomal protein L27a, putative [Ricinus communis]
14 Hb_002781_020 0.1201547149 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
15 Hb_003607_170 0.1214258996 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
16 Hb_008847_020 0.1222184517 - - 40S ribosomal protein S17C [Hevea brasiliensis]
17 Hb_000449_040 0.1226469026 - - protein with unknown function [Ricinus communis]
18 Hb_005463_060 0.1239622103 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
19 Hb_000028_400 0.1258367167 - - Protein SSU72, putative [Ricinus communis]
20 Hb_000487_320 0.1266537956 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000134_020 Hb_000134_020 Hb_000645_190 Hb_000645_190 Hb_000134_020--Hb_000645_190 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_003058_220 Hb_003058_220 Hb_000134_020--Hb_003058_220 Hb_003638_080 Hb_003638_080 Hb_000134_020--Hb_003638_080 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_000645_190--Hb_003058_220 Hb_011310_060--Hb_002293_030 Hb_002234_210 Hb_002234_210 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060 Hb_005463_060 Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_017711_010 Hb_017711_010 Hb_002293_030--Hb_017711_010 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050 Hb_000199_070 Hb_000199_070 Hb_003058_220--Hb_000199_070 Hb_005224_050 Hb_005224_050 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33695 1.7001 1.55878 2.84054 3.91632 10.1337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8167 25.7746 4.61136 1.60862 1.86668

CAGE analysis